Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0601
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 1.5
04_01_0274 + 3638409-3639332 29 1.5
06_01_0537 + 3860277-3860286,3860464-3860576,3861729-3861799,386... 28 2.0
06_01_0527 + 3822051-3822318,3822408-3822520,3823673-3823743,382... 28 2.0
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 28 2.6
11_01_0459 + 3546101-3548771,3548871-3549238 27 4.5
10_01_0160 - 1812213-1813790 27 4.5
10_01_0142 + 1694820-1695011 27 4.5
11_02_0068 + 7991816-7992603,7995209-7997177 27 6.0
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415... 27 6.0
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 27 6.0
03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995 27 6.0
10_06_0129 + 11052606-11053211 26 7.9
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 26 7.9
01_05_0421 + 21990034-21990392,21991691-21992681 26 7.9
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -1
Query: 282 EEQLLVEVEPHHLILLAPVAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGD 103
+ Q+L +P H++ P + HLT+ APA QQH + + +V P
Sbjct: 303 QPQVLQPNQPQHMVPFQP--QNQPHLTQLQAPAAQSQSQQHPPLQSAAQTQIVQAQPQSQ 360
Query: 102 VQRQ 91
V Q
Sbjct: 361 VSFQ 364
>04_01_0274 + 3638409-3639332
Length = 307
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 97 LYVAKRDFVDHITTVEPIDGVVLLDEEYVRGRKVFGQVV 213
LY+ K FVDH+ P+D + E + G K +VV
Sbjct: 200 LYITKGAFVDHLDDEHPLDRDAVRSEIFRHGWKEMCEVV 238
>06_01_0537 +
3860277-3860286,3860464-3860576,3861729-3861799,
3861887-3861978,3862080-3862167,3862264-3862375,
3862503-3862599,3862710-3862791,3863153-3863273,
3863459-3863566,3863717-3863819,3863996-3864171
Length = 390
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 297 DLFGGEEQLLVEVEPHHLILLAPV-AKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDV 127
D++GG ++LL +V P H I++ + + +T + P L+ + RL D+
Sbjct: 104 DIYGGSDRLLSQVAPRHGIVVKRIDTTKISEVTSAIGPLTKLVWLESPTNPRLQITDI 161
>06_01_0527 +
3822051-3822318,3822408-3822520,3823673-3823743,
3823831-3823922,3824024-3824111,3824208-3824319,
3824447-3824543,3824654-3824735,3825097-3825217,
3825403-3825510,3825661-3825763,3825940-3826115
Length = 476
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 297 DLFGGEEQLLVEVEPHHLILLAPV-AKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDV 127
D++GG ++LL +V P H I++ + + +T + P L+ + RL D+
Sbjct: 190 DIYGGSDRLLSQVAPRHGIVVKRIDTTKISEVTSAIGPLTKLVWLESPTNPRLQITDI 247
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 205 QVVCTFRYGREEDEVMGLNFYKELFLASKQI 297
Q++C+ YG E D++ L F K + L +Q+
Sbjct: 20 QIICSSLYGNETDKLSLLEFKKAITLDPQQV 50
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 205 QVVCTFRYGREEDEVMGLNFYKELFLASKQ 294
Q++CT YG E D + L F K + L +Q
Sbjct: 20 QIMCTSLYGNETDRLSLLEFKKAISLDPQQ 49
>10_01_0160 - 1812213-1813790
Length = 525
Score = 27.1 bits (57), Expect = 4.5
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -1
Query: 288 GGEEQLLVEVEPHHLILLAPVAKRAHHLTE---HLAPADVLLVQQHHAVDRLHRRDVVHE 118
GGE QLL+E P L VA+ L E ADVL +D LH + VVH
Sbjct: 86 GGEHQLLLEYAPGG-SLADVVARNGDRLDESAFRAYAADVL-----RGLDYLHEKLVVHG 139
Query: 117 VPLGDVQRQLAVGRALLEHF 58
G A GRA L F
Sbjct: 140 DVKGSNVLVGADGRAKLADF 159
>10_01_0142 + 1694820-1695011
Length = 63
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 207 LTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGDVQRQ 91
+ +HLA D+ L QQ +DR+ + LG VQ++
Sbjct: 25 IAKHLAQIDLKLAQQDELLDRVQTKVDRSMTSLGQVQQE 63
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 211 VCTFRYGREEDEVMGLNFYKELFLASKQIYPAPEKRSYELTRTQERLMKK 360
+C +G E+ L L K+I+ E+R +LT E ++KK
Sbjct: 305 LCCSSHGDYIYEMKPLGVIDSKILFDKRIFDPEERRPPQLTEVSEEILKK 354
>05_04_0091 +
17839118-17839303,17840876-17840923,17841381-17841526,
17841616-17841664,17842260-17842316,17842460-17842627,
17842950-17843011,17843103-17843190,17843277-17843388,
17843472-17843548,17843622-17843759,17844424-17844588,
17844667-17844780,17845026-17845122,17845242-17845390
Length = 551
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -1
Query: 147 RLHRRDVVHEVPLGDVQ-RQLAVGRALLE 64
R+ RD+V VP+ DVQ Q++V ++LLE
Sbjct: 486 RIATRDIVQFVPMRDVQGGQISVVQSLLE 514
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Frame = +1
Query: 112 RDFVDHITTVEP-------IDGVVLLDEEYVRGRKVF 201
+DFV+ I+ V+P I G + DEEY+R RK +
Sbjct: 487 QDFVEAISDVDPNFDSDDDIIGEAVYDEEYLRSRKQY 523
>03_06_0050 + 31288075-31288232,31288502-31288604,31288735-31288995
Length = 173
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 199 FGQVVCTFRYGREEDEVMGLNFYKELFLASKQIYP 303
FG + +GR++ V G + Y+++ LA Q+ P
Sbjct: 64 FGLLYNGIPFGRDDTAVSGRDTYQKMILAKYQVIP 98
>10_06_0129 + 11052606-11053211
Length = 201
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 361 VSSSVAPACESVHRIASRGPGRSVWR 284
++ +VA A E + +AS GP R WR
Sbjct: 99 LAGAVASAAEVLEAVASSGPKRRRWR 124
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Frame = +1
Query: 112 RDFVDHITTVEP-------IDGVVLLDEEYVRGRK 195
RDFV+ ++ ++P I G + DEEY+R RK
Sbjct: 528 RDFVEAVSDIDPNFDSDDEIMGEAVYDEEYLRTRK 562
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 252 HHLILLAPVAKRAHHLTEHLAPADVLLVQQHH 157
HH +L +P AHH + LA QQHH
Sbjct: 162 HHQLLFSPPPVMAHH--QELAALQEQQQQQHH 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,083,611
Number of Sequences: 37544
Number of extensions: 134624
Number of successful extensions: 448
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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