Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0601
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43331| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.85 
SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)                27   3.4  
SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29)          27   3.4  
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               27   3.4  
SB_31498| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                27   6.0  
SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76)                  27   6.0  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                27   6.0  
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               26   8.0  
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      26   8.0  
SB_44695| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)                    26   8.0  

>SB_43331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 FYKELFLASKQIYPAPEKRSYELTRTQERLMKKL 363
           + KELF  +  +   PEKR Y+ T   E   KKL
Sbjct: 84  YMKELFYRNDVVVTGPEKRKYKRTTHWEEKSKKL 117


>SB_34483| Best HMM Match : Hexapep (HMM E-Value=0.0027)
          Length = 323

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 115 DFVDHITTVEPIDGVVLLDE 174
           D VD +T ++ +DGV LLD+
Sbjct: 298 DVVDSVTLLDDVDGVTLLDD 317


>SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29)
          Length = 314

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 150 DRLHRRDVVHEVPLGDVQRQLAVGRALLEH 61
           + LHR  ++H  P G ++R +A+   LLEH
Sbjct: 175 NELHRPVMIHRAPFGSMERFIAI---LLEH 201


>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1482

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 115 DFVDHITTVEPIDGVVLLDE-EYVRGRKVFGQV 210
           D VD +  ++ +DGV LLD+ + V G K+   V
Sbjct: 537 DVVDSVAELDDVDGVTLLDDVDVVDGDKLLDNV 569


>SB_31498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
 Frame = -1

Query: 282 EEQLLVEVEPHHLILLAPVAKRAHHLT----EHLAPADVLLVQQHHAVDRLHRRDVVHEV 115
           EE++  +V    L+     A + H LT    +++    +LL    HAV+RLH   V   V
Sbjct: 361 EEKIEKKVAEGKLVDYTWKAGQLHCLTLSAIKNVTDKHLLLTVSPHAVERLHALQVYPIV 420

Query: 114 PLGDVQ--RQLAVGRALLEHFEIVNHFSFRCPR 22
                +  RQ+  G   L+HF I++ FS   P+
Sbjct: 421 LYVKFKSFRQIKKGFISLKHF-ILSSFSCVLPK 452


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 264 EVEPHHLILLAPVAKRAHHLTEHLAPADVLLVQQHHAVDRL 142
           E +P  L L   +  + H LT+H + +D+   Q H     L
Sbjct: 670 EFDPFFLALEKKLLDKGHSLTDHQSTSDIPRTQTHKVEQEL 710


>SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76)
          Length = 580

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 58  KVFKKCAPNGKLTLYVAKRDFVDHITTVEPID 153
           K  +K A  GK+T+Y+  RD    IT+++ +D
Sbjct: 377 KELQKKAKEGKITIYLDTRDGHVKITSIKGVD 408


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 252 HHLILLAPVAKRAHHLTEHLAPADVLLVQQH 160
           HH + +A + +  HH   H  P+ ++++ +H
Sbjct: 158 HHPLSIAIIHRHRHHHHHHHHPSTIIIILRH 188


>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 1841

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 276  QLLVEVEPHHLILLAPV 226
            QL+V +EP H++L APV
Sbjct: 1550 QLVVGMEPRHVVLYAPV 1566



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 276  QLLVEVEPHHLILLAPV 226
            QL+V +EP H++L APV
Sbjct: 1601 QLVVGMEPRHVVLYAPV 1617


>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 282 EEQLLVEVEPHHLILLAPVAKRAHHLTEHLAPADV 178
           EE  +V+  P HL+   P  + A + T+ LAP  V
Sbjct: 32  EEIEIVDASPKHLLSETPEDQDAEYETQSLAPQGV 66


>SB_44695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 276 QLLVEVEPHHLILLAPV 226
           QL+V +EP H++L APV
Sbjct: 64  QLVVGMEPRHVVLYAPV 80


>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 135 RDVVHEVPLGDVQRQLAVGRALLEHFE 55
           +D+VHEVPL  V R+    R +++  +
Sbjct: 868 QDLVHEVPLNVVARRYGATRGMIQSLQ 894


>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
          Length = 1345

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +1

Query: 76   APNGKLTLYVAKRDFVDHI--------TTVEPIDGVVLLDEEYVRGRKVF 201
            A  G+ T Y+AK D    I        TTV P+D V + D+   + RK+F
Sbjct: 1014 ALEGEATHYLAKYDVCQGIEDQISGDVTTVRPVDYVTMSDDIQRKMRKIF 1063


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,788,425
Number of Sequences: 59808
Number of extensions: 141568
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)