Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0601
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family...   108   1e-24
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC024817-44|AAK93864.2|  168|Caenorhabditis elegans Hypothetical...    27   3.0  
U97401-1|AAB52466.2|  336|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    26   9.3  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    26   9.3  

>U41023-3|AAA82342.2|  435|Caenorhabditis elegans Arrestin family
           protein 1 protein.
          Length = 435

 Score =  108 bits (259), Expect = 1e-24
 Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
 Frame = +1

Query: 58  KVFKKCAPNGKLTLYVAKRDFVDHITTVEPIDGVVLLDEEYVR-GRKVFGQVVCTFRYGR 234
           +VFKK +PNGK+T Y+ KRDF+D    V+ IDG+VL+DEEY++  RKV   ++  FRYGR
Sbjct: 11  RVFKKTSPNGKITTYLGKRDFIDRGDYVDLIDGMVLIDEEYIKDNRKVTAHLLAAFRYGR 70

Query: 235 EEDEVMGLNFYKELFLASKQIYPAPEKR-SYELTRTQERLMKKL 363
           E+ +V+GL F K+L   + Q+YP  +K  S  L+R QERL +KL
Sbjct: 71  EDLDVLGLTFRKDLISETFQVYPQTDKSISRPLSRLQERLKRKL 114


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 282 EEQLLVEVEPHHLIL-LAPVAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHE 118
           ++++LVE+EP  L L    V K+A+      A  DV L  Q +++   ++R +  E
Sbjct: 47  DDEVLVEIEPEQLFLQFLRVIKKAYETLPPNAHVDVGLCTQRNSIVLWNKRTLKEE 102


>AC024817-44|AAK93864.2|  168|Caenorhabditis elegans Hypothetical
           protein Y54G2A.23 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 132 DVVHEVPLGDVQRQLAVGRALLEHFE 55
           DV+ +VP GD  +  A+G+ + EH E
Sbjct: 31  DVMAKVPAGDKSKPDAIGKVIREHCE 56


>U97401-1|AAB52466.2|  336|Caenorhabditis elegans Hypothetical
           protein F21A9.2 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 118 FVDHITTVEPIDGVVLLDEEY-VRGRKVFGQVVCTFRYGREEDEVMGLNFYKELFLASKQ 294
           F  ++TTVEP+  +++ D  Y +   K+  +  C   +  + + +  L  +++L+ + K+
Sbjct: 38  FTKNLTTVEPLRAILVADMNYRLEQEKLEKKHECPHCHVAKFNSLHNLKVHEDLYCSKKK 97

Query: 295 I 297
           +
Sbjct: 98  L 98


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 138 RRDVVHEVPLGDVQRQLAVGRALLEH--FEIVNHFSFRCPRLYW 13
           RR +   VP+GDV R+  +   L  H  FE+      R P++ W
Sbjct: 492 RRMLNETVPVGDVLRKFELSPKLQSHVDFEVRKIIRKRQPKMRW 535


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 138 RRDVVHEVPLGDVQRQLAVGRALLEH--FEIVNHFSFRCPRLYW 13
           RR +   VP+GDV R+  +   L  H  FE+      R P++ W
Sbjct: 492 RRMLNETVPVGDVLRKFELSPKLQSHVDFEVRKIIRKRQPKMRW 535


>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 228 VAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGDVQRQLAV-GRALLEHFEI 52
           VAK    +TEHL   + +L+++   +  +   +  +E+ L ++ +QL +     LE F I
Sbjct: 266 VAKNPKFVTEHLKVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVI 325


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 166 LDEEYVRGRKVFGQVVCTFRYGREEDEVMGLNFYKELFLASKQIYPAPEKRSYELTRTQE 345
           +D + +  R +    +C FR+G   +   GL+  +    A + +  A   R +E T  QE
Sbjct: 561 VDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVGTRQHEKTAEQE 620

Query: 346 RL 351
           ++
Sbjct: 621 KI 622


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 231 PVAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGDVQRQLAVGRALLEHFEI 52
           P     H  +  +AP  +  +  +H ++R H       VP  D++  +A  R +++ F +
Sbjct: 372 PHGAAQHPSSGTVAPMHITSLPGNHPLNRTHLLFNRQVVPALDIRNLIAQHRLMVDDF-V 430

Query: 51  VNHFSFRCP---RLYWP 10
                +R P   + YWP
Sbjct: 431 RAQICYRLPENHQDYWP 447


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 231 PVAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGDVQRQLAVGRALLEHFEI 52
           P     H  +  +AP  +  +  +H ++R H       VP  D++  +A  R +++ F +
Sbjct: 372 PHGAAQHPSSGTVAPMHITSLPGNHPLNRTHLLFNRQVVPALDIRNLIAQHRLMVDDF-V 430

Query: 51  VNHFSFRCP---RLYWP 10
                +R P   + YWP
Sbjct: 431 RAQICYRLPENHQDYWP 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,488,122
Number of Sequences: 27780
Number of extensions: 106820
Number of successful extensions: 343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)