Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0601
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.64 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 112 RDFVDHITTVEPIDGVVLLDEEY 180
           RDFVD+       D +VLL E Y
Sbjct: 279 RDFVDNYAEENKRDEIVLLTEAY 301


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 169 DEEYVRGRKVFGQVVCTFRYG 231
           D+EY   RK   ++   +RYG
Sbjct: 204 DKEYRARRKFIAEIAFAYRYG 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 222 KRAHHLTEHLAPADVLLVQQHH 157
           +R HHL  H        VQ HH
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHH 160


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 315 LLGGRVDLFGGEEQLLVEV 259
           L+G  +DLFG  + +  +V
Sbjct: 52  LIGNALDLFGSPDAMFSQV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,994
Number of Sequences: 438
Number of extensions: 1089
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)