Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0600
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 143 7e-35
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.039
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.9
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.9
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.9
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.5
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 3.3
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 3.3
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.3
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 28 4.4
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 5.8
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 27 5.8
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 143 bits (346), Expect = 7e-35
Identities = 71/135 (52%), Positives = 89/135 (65%), Gaps = 1/135 (0%)
Frame = -3
Query: 498 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 322
M+D +V P ++ MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 321 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 142
AENCDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 141 DFGEETPALDVLKDY 97
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 387 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 220
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 292 LVCGFITVLSQNT*YCLPLVKSFSGFVK 375
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 292 LVCGFITVLSQNT*YCLPLVKSFSGFVK 375
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -3
Query: 381 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 220
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -3
Query: 381 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 220
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 270 NEHQIPLVKVDNNKKLGEWAGLCK 199
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +3
Query: 195 QSCRDQPILQAFCCCQP*PV----ESDVRC--TEPEQVSCMRLHHSSQPKHIVLLASC 350
QSC P +Q C CQ P E+ C T P Q SC Q ++V + C
Sbjct: 27 QSCGCAPKVQPSCSCQQTPYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 369 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 205
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 393 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 286
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 438 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 295
V VAL + T LIH +H L++ K L V C+L ++ +A Y
Sbjct: 16 VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 207 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 100
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -1
Query: 272 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 108
+T+ + RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 465 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 352
P+ +G + E+L+T +I +HG EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,998
Number of Sequences: 27780
Number of extensions: 224642
Number of successful extensions: 698
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -