Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0600
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 156 9e-39
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 156 9e-39
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 156 9e-39
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 148 2e-36
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 148 2e-36
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.19
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.33
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 0.44
At1g51920.1 68414.m05853 expressed protein 31 0.58
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.77
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.77
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 1.0
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.8
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 4.1
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 5.4
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 5.4
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 27 7.2
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 7.2
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 9.5
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 9.5
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 27 9.5
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 9e-39
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = -3
Query: 447 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 268
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 267 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 94
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 9e-39
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = -3
Query: 447 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 268
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 267 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 94
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 9e-39
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = -3
Query: 447 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 268
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 267 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 94
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 2e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = -3
Query: 495 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 319
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 318 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 139
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 138 FGEETPALDVLKDYL 94
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 2e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = -3
Query: 495 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 319
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 318 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 139
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 138 FGEETPALDVLKDYL 94
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.19
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -3
Query: 387 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 208
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 207 LCK 199
K
Sbjct: 110 ATK 112
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.33
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = -3
Query: 417 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 238
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 237 NNKKLGEWAGLCKIDKDGKARKIVG 163
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 0.44
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -3
Query: 414 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 235
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 234 NKKLGEWAGLCKI 196
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +3
Query: 177 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 323
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 381 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 220
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.77
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -3
Query: 381 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 220
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 285 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 160
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 354 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 265
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = +3
Query: 183 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 362
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 363 RLREDRAQDHHG 398
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 330 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 419
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 130 GNSSVGCAQGLPQVVELILRCNANPY 53
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 199 LAETSPFSKLFVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG 366
LA+T SK+FV V L W + F A L+ + I L +PL+++ G
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYG 126
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 323 WLRTVMKPHTRNLFRLCATNIRFHWSRL 240
WL + K H +F L T + + W+ L
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYLWNTL 354
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 419 SCSATFTSMLLPDKMGLVGT 478
SC+ TF S LPD++G++GT
Sbjct: 423 SCAGTFVS--LPDELGMLGT 440
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 234 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 127
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 392 PWIKAVFSTSCSATFTSMLLPDKMGLVGTSTS 487
PW+K + +TS S+ +S LP+ + + G S S
Sbjct: 134 PWLKHLSTTSSSSASSSSRLPNYLYIPGGSIS 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,462,269
Number of Sequences: 28952
Number of extensions: 206756
Number of successful extensions: 641
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -