Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0597
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   6.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   6.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   8.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.7  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.7  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.7  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 499 SQPYRHTHPFYRTMLP 546
           S  + H HP +  MLP
Sbjct: 358 SMGHSHAHPMHHDMLP 373


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 521 CVCRYGWE 498
           C+C+ GWE
Sbjct: 92  CICKEGWE 99


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 136 IRALFLRYLNARNQLRVNDRLF 201
           ++ L +RY N   QLR   R F
Sbjct: 169 VKMLLVRYRNLTKQLRFKLRFF 190


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 136 IRALFLRYLNARNQLRVNDRLF 201
           ++ L +RY N   QLR   R F
Sbjct: 169 VKMLLVRYRNLTKQLRFKLRFF 190


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 499 SQPYRHTHPFYRTMLP 546
           S  + H HP +  MLP
Sbjct: 358 SMGHSHAHPMHHDMLP 373


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 460 GSPCPHPRRPARHSQPYRHTHP 525
           G  CP P   +      RH HP
Sbjct: 154 GFTCPAPGEVSNSGSFSRHAHP 175


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +1

Query: 460 GSPCPHPRRPARHSQPYRHTHP 525
           G  CP P   +      RH HP
Sbjct: 154 GFTCPAPGEVSNSGSFSRHAHP 175


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 449 PRTPGAHARTPAAQRAI 499
           P TPG  ++ PA+Q+++
Sbjct: 92  PGTPGPLSQAPASQQSL 108


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 383 GRHDSRVPGASSAP 424
           GR    +PGASS P
Sbjct: 84  GRSAGSIPGASSTP 97


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 449 PRTPGAHARTPAAQRAI 499
           P TPG  ++ PA+Q+++
Sbjct: 248 PGTPGPLSQAPASQQSL 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,177
Number of Sequences: 336
Number of extensions: 2872
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)