Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0597
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    30   0.25 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.2  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 371  PPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGI 517
            PP  G   S VP  +  PV   P  PPR   A  R+     + P  + I
Sbjct: 1022 PPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQRSGDLLASSPEESSI 1070


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 367 QLMAQLPELQLGERLAGQARRNHLMTFRGIVLRRSRAQHRRPWITTT 227
           QL   L ELQ  + +A     +   +FRG V     +   + WI  T
Sbjct: 226 QLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDT 272


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 534 HHASYAYLYRSRAQQSPNYQHRPYSSGFVPP 626
           +  ++ YLY SRA+     ++   S+ FVPP
Sbjct: 331 YRIAFPYLYNSRARSVALSEYHQPSNVFVPP 361


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +2

Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRT 511
           PP GR     P   SAP       P  +  A +  PA   AIP R+
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 371  PPPVGRHDSR-VPGASSAPVRALPHAPPRTPGAHARTPAAQRAIP 502
            P P+   D+  +P  S+AP   +P + P  P + +  P+A   +P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,486
Number of Sequences: 5004
Number of extensions: 44030
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)