Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0597
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 33 0.26
SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23) 32 0.45
SB_5896| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 31 0.79
SB_54540| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=2.2) 31 0.79
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 30 1.4
SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82) 30 1.4
SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9) 30 1.4
SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 2.4
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035) 29 2.4
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 3.2
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 29 4.2
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 5.6
SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4) 28 7.4
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 28 7.4
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 28 7.4
SB_15629| Best HMM Match : S_locus_glycop (HMM E-Value=3.4) 25 8.9
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 27 9.7
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 27 9.7
SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23) 27 9.7
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 27 9.7
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 368 YPPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHAR-TPAAQRAIPN 505
YPP R+ S P +P R P +PPR P +H R P+ R +P+
Sbjct: 334 YPPSPPRYPSSHPRYPPSPPR-YPPSPPRYPSSHPRYPPSPLRYLPS 379
>SB_42836| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.23)
Length = 522
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTA 535
PVG H+ + G A HAPPR A A+ A A P+R G + A
Sbjct: 161 PVGAHN--MAGGHPRVQHATDHAPPRRQSAPAKVHAEGAAAPDRGGAGAVPAA 211
>SB_5896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTG 514
PVG H+ + G A HAPPR A A+ A A P+R G
Sbjct: 281 PVGAHN--MAGGHPRVQHATDHAPPRRQSAPAKVHAEGAAAPDRGG 324
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNR-TGIHTLSTAPCFLCV 553
PVG H+ + G A H PPR A+ A A P+R + T++T LC
Sbjct: 388 PVGAHN--MAGGHPRVQHATDHVPPRRQSTPAKVHAEGAAAPDRGCAVRTIATRLRTLCA 445
Query: 554 F 556
+
Sbjct: 446 Y 446
>SB_54540| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=2.2)
Length = 558
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTA 535
PVG H+ + G A HAPPR A A+ A A P+R G + A
Sbjct: 476 PVGVHN--MAGGHPRVQHATDHAPPRRQSAPAKVHAEGAAAPDRGGAGAVPAA 526
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 377 PVGRHDSR--VPGASSAPVRALPHAPPRT 457
PVGRHD R P A++ R P PPRT
Sbjct: 486 PVGRHDGRRPTPMAAAYQSRTHPSTPPRT 514
>SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)
Length = 458
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 469 CPHPRRPARHSQPYRH 516
CPHPRRPA+ + P H
Sbjct: 396 CPHPRRPAKPAMPTTH 411
>SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)
Length = 624
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTA 535
PVG H+ + G A H PPR A A+ A A P+R G + A
Sbjct: 542 PVGAHN--MAGGHPRVQHATDHVPPRRQSAPAKVHAEGAAAPDRGGAGAVPAA 592
>SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 469 CPHPRRPARHSQPYRH 516
CPHPRRPA+ + P H
Sbjct: 311 CPHPRRPAKPAMPTTH 326
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 377 PVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTA 535
PVG H+ + G A H PPR A A+ A A P+R G + A
Sbjct: 388 PVGAHN--MSGGHPRVQHATDHVPPRRQSAPAKVHAEGAAAPDRGGAGAVPAA 438
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRT----PGA-HARTPAAQRAIP 502
PP G H SRVP RALP P PGA H R P+ + P
Sbjct: 351 PPYPGSHYSRVPPPDGPYTRALPPGEPYARMPPPGATHPRVPSPGASHP 399
>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 472 PHPRRPARHSQPYRHTHPFYRTMLPMRICTDRGRSSLRTTNTVRI-HPVSCRHRP 633
PHP H+QPYR HP+ P RI + T RI HP + H P
Sbjct: 371 PHPY--INHTQPYRIPHPYINHTQPYRI----PHPYINHTQPYRIPHPYTKPHGP 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 472 PHPRRPARHSQPYRHTHPFYRTMLPMRI 555
PHP H+QPYR HP+ P RI
Sbjct: 345 PHPY--INHTQPYRIPHPYINHTQPYRI 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 472 PHPRRPARHSQPYRHTHPFYRTMLPMRI 555
PHP H+QPYR HP+ P RI
Sbjct: 358 PHPY--INHTQPYRIPHPYINHTQPYRI 383
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 368 YPPPVGR-HDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNR 508
Y PP+ R H A + +APP P AH + P A+P R
Sbjct: 1518 YAPPLARLHHPPFALAKAIKAEERENAPPIPPRAHTQEPEVPPALPPR 1565
>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
Length = 671
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIH 520
PP G+ S+ RA +PP P A P+A +PN +G H
Sbjct: 185 PPPGQASQLPLQEQSSGSRAEEASPPPPPALVATGPSASSRLPNASGHH 233
>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2988
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 534 HHASYAYLYRSRAQQSPNYQHRPYSSGFVPPSPA 635
HH + Y ++ + + N + RP+++ VPPSP+
Sbjct: 2448 HHCTDPYSMSTQDETNYNSRWRPFNTSDVPPSPS 2481
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGI 517
PPPVG P P +L + PP P P IP R G+
Sbjct: 368 PPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRGAPPPGP-MIPGRAGL 415
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGA--HARTPAAQRAIPN 505
PP RH R G A LPH P R PG RTP + N
Sbjct: 459 PPRSRHPPRTTGPELACPNRLPH-PTRRPGVLYRDRTPPSSANATN 503
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVR-----ALPHAPPRTPGAHARTP--AAQRAIPNRTGIHT 523
P + R SR P + AP + A P PRT AH+ T AA P G HT
Sbjct: 623 PGIDRVPSRRPSKAFAPAKVHAEGAAPAPSPRTHAAHSMTAAGAASAPGPGEKGDHT 679
>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 389 HDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPN 505
H S PG++ + PH P TP TP + + P+
Sbjct: 163 HPSYTPGSTPHTPGSTPHTPGSTPHTQESTPHSPESTPH 201
>SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 415
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 472 PHPRRPARHSQPYRHTH 522
PH RR ARH +P + TH
Sbjct: 353 PHARRTARHCEPAQRTH 369
>SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)
Length = 393
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 501 GMARWAAGVRAWAPGVRGGAWGSARTGAEEAPGTLESWRPTGGG 370
G AR +G AW G G WG+ E A +L GG
Sbjct: 9 GGARVESGEHAWKVGSTRGKWGARVESGEHAWKSLRDKEERNGG 52
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAP 538
PPP +H + + P AL A P A P+A A P G + +TAP
Sbjct: 14 PPPSPKHYTPTQPINQVPPPALTTAIPTVAAYQAAHPSAINASPTTVGSPS-TTAP 68
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 504 LGMARWAAGVRAWAPGVRGGAWGSARTGAEEAPGTLESWRPTGGGY 367
+G + V PG+ G G+ G ++AP T RP GY
Sbjct: 292 MGQSTQGPNVPGIRPGMDGAQRGTTPQGWQQAPSTTAQVRPGVAGY 337
>SB_15629| Best HMM Match : S_locus_glycop (HMM E-Value=3.4)
Length = 240
Score = 25.4 bits (53), Expect(2) = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 508 YRHTHPFYRTMLPMRICTDRGRSSLRT-TNTVRIHPVSC 621
Y+ THP L +R CT + +LR+ T T ++ SC
Sbjct: 144 YKETHPTIIRKLTLRSCTSTWKLTLRSRTITWKLTLRSC 182
Score = 20.6 bits (41), Expect(2) = 8.9
Identities = 8/21 (38%), Positives = 9/21 (42%)
Frame = +1
Query: 463 SPCPHPRRPARHSQPYRHTHP 525
SPC R Y+ THP
Sbjct: 118 SPCDRVRIYGNSPYDYKETHP 138
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 368 YPPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIP 502
Y P R S+ PG + A R H+P R P + + + R +P
Sbjct: 244 YQPIQTRRRSQSPGQTYATKRGRSHSPRRVPVSPRQRSNSPRRVP 288
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 377 PVGRHDSR---VPGASSAPVRALPHAPPRTPGAHARTP 481
PVGRHD R P A++ R P PPR+ P
Sbjct: 486 PVGRHDGRRTYPPMAAAYQKRTHPSTPPRSINGGCTAP 523
>SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)
Length = 149
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 519 TPFLPHHASYAYLYRSRAQQSPNYQHRPYSSGFVPPSP 632
+P P+H ++ PN+QHRP +S P P
Sbjct: 72 SPVPPNHQCRPITSTPQSPVPPNHQHRPITSAAQSPVP 109
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 395 SRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRT 511
S++ A+SA V A PP+TP +P ++ P +T
Sbjct: 6 SKLSKAASAKVLAPETPPPKTPTKSTPSPIKKQVTPKKT 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,238,378
Number of Sequences: 59808
Number of extensions: 424158
Number of successful extensions: 1613
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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