Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0597
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 35 0.043
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical pr... 31 0.70
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 0.92
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.8
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.8
AF016436-3|AAC25896.1| 331|Caenorhabditis elegans Serpentine re... 29 2.8
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 4.9
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 27 8.6
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 35.1 bits (77), Expect = 0.043
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAPCFLCV 553
PP+ H +RVP APV +L R P A A+ PA R P+ T +T V
Sbjct: 222 PPINPHKNRVPTKPPAPV-SLQQITTRLPPA-AKKPAPSRGRPSNKRQTTTTTTTTITSV 279
Query: 554 FVPIEGAAVSELPT-PSV 604
+ + + LPT PSV
Sbjct: 280 SKSPQISDTNTLPTLPSV 297
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -1
Query: 501 GMARWAAGVRAWAPGVRGGAWGSARTGAEEAPGTLESWRPTGGG 370
G W G W G G WG R G G +W GGG
Sbjct: 44 GRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGG 87
>Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical
protein T01E8.6 protein.
Length = 199
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 72 YLL*PQREDARPASDKQKRPSHPCTFPSVFERTEPVKSER*TFPRMRPPLT 224
YL P E A+P+S++ + P T SV + EP+K +R T P LT
Sbjct: 27 YLSTPAPEPAKPSSEETTESTEPAT--SVEDAGEPMKEKRITQPYSSEALT 75
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 504 LGMARWAAGVRAWAPGVRGGAWGSARTGAEEAPGTLESWRPTGGG 370
L +W G PG R G WG R G PG W GGG
Sbjct: 15 LATCQWGPGGWGGGPG-RWGGWGGNRWGGGGGPG---GWGNNGGG 55
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 413 SSAPVRALPHAPPRTPGAHARTPAA--QRAIPNRTGIHTLSTAP 538
S P R++P P T A TPAA R P+R+ +TAP
Sbjct: 25 SRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 413 SSAPVRALPHAPPRTPGAHARTPAA--QRAIPNRTGIHTLSTAP 538
S P R++P P T A TPAA R P+R+ +TAP
Sbjct: 154 SRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
>AF016436-3|AAC25896.1| 331|Caenorhabditis elegans Serpentine
receptor, class j protein40 protein.
Length = 331
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 524 LSTAPCFLCVFVPIEGAAVSELPTP 598
+S APC C F+PI G ELP P
Sbjct: 257 ISFAPCLFCWFIPISGI---ELPRP 278
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 404 PGASSAPVRA-LPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAPCFLCVF 556
P P+R P PP PG R +P R GI+ T P C++
Sbjct: 98 PWCQCEPIRPKCPPGPPGPPGC--RGEPGPSGLPGRRGINNYETLPLKKCIW 147
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQ 490
PP S+ P + P R+ P APPR GA A+ P A+
Sbjct: 357 PPKAAPASKAPTRAPIPARSAP-APPR--GAPAKAPKAE 392
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -1
Query: 501 GMARWAAGVRAW-APGVRGGAWGSARTGAEEAPGTLESWRP 382
G +RW G W G GG WG A A ++ S+ P
Sbjct: 708 GGSRWGGGRGGWGGGGWGGGGWGKRSIRAANASISMPSFDP 748
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,050,279
Number of Sequences: 27780
Number of extensions: 287440
Number of successful extensions: 1316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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