Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0597
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g63070.1 68416.m07084 PWWP domain-containing protein putative... 31 0.65
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi... 31 0.65
At5g38560.1 68418.m04662 protein kinase family protein contains ... 31 0.85
At3g24550.1 68416.m03083 protein kinase family protein contains ... 30 1.1
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ... 30 1.5
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 3.4
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 29 3.4
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 28 4.5
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp... 28 4.5
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 28 6.0
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ... 28 6.0
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 27 7.9
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 7.9
At1g10620.1 68414.m01204 protein kinase family protein contains ... 27 7.9
>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
transcription factor HUA2, Arabidopsis thaliana,
EMBL:AF116556
Length = 1347
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 531 PHHASYAYLYRSRAQ-QSPNYQHRPYSSGFVPPSP 632
P ++S L +S + + N+QHRPY S PP P
Sbjct: 1181 PSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215
>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 918
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 567 RAQQSPNYQHRPYSSGFVPPSPAP 638
+ +Q+PNY HRPY + P AP
Sbjct: 80 QTRQNPNYNHRPYGASSSPRGSAP 103
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAP 538
PPP P ++ P + P P TP TP+ + P+ T T +T+P
Sbjct: 117 PPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPS-TPTPTTTTSP 171
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIP 502
PP + P ASS P P +PP +P ++ +P +P
Sbjct: 18 PPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLP 61
>At1g06070.1 68414.m00636 bZIP transcription factor, putative
(bZIP69) similar to transcriptional activator RF2a
GB:AF005492 GI:2253277 from [Oryza sativa]; contains
Pfam profile PF00170: bZIP transcription factor
Length = 423
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAPPRTP 460
PPP GR+ + P SS ++A PP TP
Sbjct: 16 PPPSGRYSAFSPNGSSFAMKAESSFPPLTP 45
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 3.4
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 1/115 (0%)
Frame = +2
Query: 260 P*PSQDNTTKRHQMISASLPGEAXXXXXXXXXXXXXYPPPVGRHD-SRVPGASSAPVRAL 436
P S K H +S P A PP S P S P A
Sbjct: 143 PSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALS--PSHAT 200
Query: 437 PHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAPCFLCVFVPIEGAAVSELPTPS 601
H+P TP ++P+ P+ + HT S +P P + S PS
Sbjct: 201 SHSPA-TPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPS 254
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 371 PPPVGRHDSRVPGASSAPVRALPHAP---PRTPGAHARTPA 484
PP V R P +S PV++ P AP TP AHA P+
Sbjct: 634 PPVVYSPPPRPPKINSPPVQSPPPAPVEKKETPPAHAPAPS 674
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 464 AHARTPAAQRAIPNRTGIHTLSTAPCFLCVFVPIEGAA 577
+H R+P++ IP+ H L PC C +VP+ ++
Sbjct: 30 SHVRSPSSSALIPSIPE-HELFLVPCRRCSYVPLSSSS 66
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 368 YPPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPA 484
YP V R + + S A V + P PP +P + A PA
Sbjct: 203 YPETVTRKNPEIEQKSPAAVESSPSLPPSSPPSVAIAPA 241
>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
expressor of Pathogensis Related genes 5 (cpr5);
regulator of disease resistance and senescence (Plant J.
(2001)26(4)409-420.
Length = 564
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 579 TAAPSIGTNTHRKHGAVERVCMPVRLGMARWAAGVR 472
T++ S +T R V R+ P+RLGMAR + G R
Sbjct: 75 TSSTSNSNSTKRVTRVVHRLRNPMRLGMARRSVGER 110
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 368 YPPPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAP 538
+PPP RH S + SS AP + + + AA + +RT T + P
Sbjct: 28 FPPPTNRHPSPIGRMSSGGGGGGSAAPRQRSNSTSVKAAASTTVSSRTVEETFNLVP 84
>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
domain, PF02731: SKIP/SNW domain found in chromatin
proteins.
Length = 613
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPR 454
PP +H RVP AS +P + H+PPR
Sbjct: 221 PPKFKH-KRVPRASGSPPVPVMHSPPR 246
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 374 PPVGRHDSRVPGASSAPVRALPHAPPRTPGAHARTPAAQRAIPNRTGIHTLSTAP 538
PP R+P S++P P APP P R P+A P + G + P
Sbjct: 754 PPAPPAPPRLPTHSASPPP--PTAPPPPPLGQTRAPSAPPPPPPKLGTKLSPSGP 806
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 76 CCDRSEKTRDPRVTNKSGRRIRALFLRYLNARNQLRVNDRLF 201
C D+ + DP+ KSG+ +A L R + ++NDRL+
Sbjct: 291 CSDQIDDEDDPKYKKKSGKGSQAKNL-MAERRRRKKLNDRLY 331
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 266 PSQDNT-TKRHQMISASLPGEAXXXXXXXXXXXXXYPPPVGRHDSRVPGASSAPVRALPH 442
PSQ+N+ ++ +S+ LP P+G +RVP +SS+P
Sbjct: 168 PSQENSGSQGSPPLSSLLPPMLPLNPNSPGNPLQPLDSPLGGESNRVPSSSSSP------ 221
Query: 443 APPRTPGAHARTPAAQRAIPNRTG 514
+PP G++ + + R N G
Sbjct: 222 SPPSLSGSNNHSGGSNRHNANSNG 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,553
Number of Sequences: 28952
Number of extensions: 269476
Number of successful extensions: 992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -