Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0596
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    29   0.68 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    27   2.1  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      27   3.6  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   6.3  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   6.3  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   6.3  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   6.3  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 287 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 436
           YT P  L CD+G+K   T I   F +IL ++     +    I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 255  IYQNLNMVRPSTHYPTFYFATEERKRI 335
            I+  L +V+PS  +P FY  +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 389  WFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKI 514
            W  T K    +HV+    +  +PV  AL+ + +Y+RT  + I
Sbjct: 892  WLTTLKKPQSIHVSGRFPQVSSPVNTALSNSLLYIRTLSRVI 933


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 509 KIVSLATKGTRYEVVNELFTS-HQNIIFGQPENAAKMFKIL 628
           +I  +A +G  ++ ++ L    H NII+G PE   K   I+
Sbjct: 59  QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNII 99


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 109 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 204
           ST   TEN  ++KN+F+  + F+ +   ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 311
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 311
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 311
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 311
           CI      S Q+  +G +NF +IL++ SVA
Sbjct: 98  CINMLCFLSSQSSPQGWINFLYILWIFSVA 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,418
Number of Sequences: 5004
Number of extensions: 67512
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)