Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0596
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   5.0  
07_03_1660 + 28435230-28435331,28435518-28435748                       28   6.6  
02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835     28   8.7  

>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 207 IFKGQGCLISNGSYYLIYQNLNMVRPSTHYPT 302
           I+KG+    S+G +  + Q LN   PS+H P+
Sbjct: 372 IYKGKSSAQSSGEFKRLVQTLNEKPPSSHVPS 403


>07_03_1660 + 28435230-28435331,28435518-28435748
          Length = 110

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/65 (21%), Positives = 30/65 (46%)
 Frame = +2

Query: 293 LPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPITMEDKTPVYAAL 472
           +P F+  D      K E+ N F  +L  +CL W + + ++  LH+      +++ +    
Sbjct: 35  IPGFM--DLEYATRKKEMANKFRVMLLIKCLNWMDCNMLLDNLHLTEAAFRNRSMIRKCT 92

Query: 473 NKNKM 487
            + K+
Sbjct: 93  GEGKI 97


>02_05_0208 - 26782955-26783275,26784317-26784632,26784732-26784835
          Length = 246

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 539 RYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQFGCHGLGVVQD 676
           RY    EL      +   +PEN AK+F+I++   + G     +VQD
Sbjct: 188 RYNNQLELMMKLNEVYEKEPENMAKIFEIMQNMQECGQPPSDLVQD 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,502
Number of Sequences: 37544
Number of extensions: 368549
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)