Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0596
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)                    28   8.9  
SB_6911| Best HMM Match : Ank (HMM E-Value=0)                          28   8.9  

>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/85 (21%), Positives = 41/85 (48%)
 Frame = +2

Query: 404  KMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKIVSLATKGTRYEVVNELFTSHQNI 583
            K+++ L     T  D  P    L++    +++ G K+V++A        + +L  + ++I
Sbjct: 779  KVMILLTDGNQTGIDNAPDAIPLSEAIKPIKSLGVKVVAIAIGSADRNQLLDLVETEEDI 838

Query: 584  IFGQPENAAKMFKILKKAPQFGCHG 658
            +  QP N  ++ + +K+   + C G
Sbjct: 839  L--QPRNFGELLQYVKQTVSYSCRG 861


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -2

Query: 470 RQRKLASCPPLLLGLHVRTQSFWMY*T------IPNILWPKSFR 357
           R R++   PP  + LH+   S W+Y T         + WP++FR
Sbjct: 151 RPRRIIYSPPGAISLHIPGNSHWLYETPRSDVVFTLLFWPRAFR 194


>SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 377 LWPKSFRRDCQFLFYSFSLLCRKV 306
           +W   +   C ++ YSFSL+CRKV
Sbjct: 69  IWIVIYTWQCLWIVYSFSLICRKV 92


>SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 314 DRGEKKNKTEIDNPFERILARECLEW 391
           D G+K+   E+   FE +L R+CL+W
Sbjct: 199 DEGKKEESLEL--AFEYLLTRDCLQW 222


>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1961

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 374  WPKSFRRDCQFLFYSFSLLCRKVKSRVMCTWADHI*VLIDQVVAAVRNEAALAFEYLFSL 195
            W K  +++   +F SFS   R    R++    D    LID V   ++ EA+  F YL +L
Sbjct: 1890 WQKQIKKN--LVFPSFSTNTRYRLKRILVDVTDD--ELIDIVTILIKGEASRMFNYLRAL 1945

Query: 194  E 192
            +
Sbjct: 1946 Q 1946


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,135,113
Number of Sequences: 59808
Number of extensions: 453999
Number of successful extensions: 1046
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)