Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0596
         (726 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113438-1|AAM29443.1|  248|Drosophila melanogaster RE27758p pro...   134   9e-32
AY060877-1|AAL28425.1|  248|Drosophila melanogaster GM04029p pro...   134   9e-32
AE014134-59|AAF51533.1|  248|Drosophila melanogaster CG11488-PA ...   134   9e-32
AY075196-1|AAL68065.1|  608|Drosophila melanogaster AT13609p pro...    29   8.5  
AE014134-1621|AAF52762.1|  602|Drosophila melanogaster CG17005-P...    29   8.5  

>AY113438-1|AAM29443.1|  248|Drosophila melanogaster RE27758p
           protein.
          Length = 248

 Score =  134 bits (325), Expect = 9e-32
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
 Frame = +2

Query: 188 RFRGKINIQRPRLPHFERQLLLDLSKPKYGPPKYTLPDFLLCDRGEKKNKTEIDNPFERI 367
           RFRGKINIQRP+ PH+ER  ++ +++PKY  P+          R E+  + + +NP+  I
Sbjct: 23  RFRGKINIQRPKAPHYERARVVAVTQPKY--PELPKAKSCFKTRAERTQQQQ-ENPYNEI 79

Query: 368 LARECLEWFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKIVSLATKGTRYE 547
           +ARE   W + S+++ F H++ IT +D   V   L+K  ++L++YG KI+  A K TRYE
Sbjct: 80  IAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLHLKSYGSKIIEQAVKNTRYE 139

Query: 548 VVNELFTSHQNIIFG-QPENAAKMFKILKKAPQFGCHGLGVVQDRLLSKNEL 700
            +  LF S+  I+F   PE  A + +I+++ PQ    G G+V++ +LS+N+L
Sbjct: 140 AIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLG-GIVEETMLSRNQL 190


>AY060877-1|AAL28425.1|  248|Drosophila melanogaster GM04029p
           protein.
          Length = 248

 Score =  134 bits (325), Expect = 9e-32
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
 Frame = +2

Query: 188 RFRGKINIQRPRLPHFERQLLLDLSKPKYGPPKYTLPDFLLCDRGEKKNKTEIDNPFERI 367
           RFRGKINIQRP+ PH+ER  ++ +++PKY  P+          R E+  + + +NP+  I
Sbjct: 23  RFRGKINIQRPKAPHYERARVVAVTQPKY--PELPKAKSCFKTRAERTQQQQ-ENPYNEI 79

Query: 368 LARECLEWFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKIVSLATKGTRYE 547
           +ARE   W + S+++ F H++ IT +D   V   L+K  ++L++YG KI+  A K TRYE
Sbjct: 80  IAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLHLKSYGSKIIEQAVKNTRYE 139

Query: 548 VVNELFTSHQNIIFG-QPENAAKMFKILKKAPQFGCHGLGVVQDRLLSKNEL 700
            +  LF S+  I+F   PE  A + +I+++ PQ    G G+V++ +LS+N+L
Sbjct: 140 AIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLG-GIVEETMLSRNQL 190


>AE014134-59|AAF51533.1|  248|Drosophila melanogaster CG11488-PA
           protein.
          Length = 248

 Score =  134 bits (325), Expect = 9e-32
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
 Frame = +2

Query: 188 RFRGKINIQRPRLPHFERQLLLDLSKPKYGPPKYTLPDFLLCDRGEKKNKTEIDNPFERI 367
           RFRGKINIQRP+ PH+ER  ++ +++PKY  P+          R E+  + + +NP+  I
Sbjct: 23  RFRGKINIQRPKAPHYERARVVAVTQPKY--PELPKAKSCFKTRAERTQQQQ-ENPYNEI 79

Query: 368 LARECLEWFNTSKMIVFLHVNPITMEDKTPVYAALNKNKMYLRTYGKKIVSLATKGTRYE 547
           +ARE   W + S+++ F H++ IT +D   V   L+K  ++L++YG KI+  A K TRYE
Sbjct: 80  IAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLHLKSYGSKIIEQAVKNTRYE 139

Query: 548 VVNELFTSHQNIIFG-QPENAAKMFKILKKAPQFGCHGLGVVQDRLLSKNEL 700
            +  LF S+  I+F   PE  A + +I+++ PQ    G G+V++ +LS+N+L
Sbjct: 140 AIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLG-GIVEETMLSRNQL 190


>AY075196-1|AAL68065.1|  608|Drosophila melanogaster AT13609p
           protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 243 SYYLIYQNLNMVRPSTHYPTFYFATEER--KRIKQKLTIPSKGFWP 374
           S+Y I Q L +   +  + +F FA+ +R  K +   LT+P +  WP
Sbjct: 204 SFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWP 249


>AE014134-1621|AAF52762.1|  602|Drosophila melanogaster CG17005-PA
           protein.
          Length = 602

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 243 SYYLIYQNLNMVRPSTHYPTFYFATEER--KRIKQKLTIPSKGFWP 374
           S+Y I Q L +   +  + +F FA+ +R  K +   LT+P +  WP
Sbjct: 204 SFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWP 249


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,909,678
Number of Sequences: 53049
Number of extensions: 669895
Number of successful extensions: 1609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)