Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0596
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein...    28   5.9  
U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein...    28   5.9  
U53180-4|AAA96286.2|  558|Caenorhabditis elegans Suppressor of p...    28   7.8  
AY160228-1|AAN62581.1|  558|Caenorhabditis elegans suppressor of...    28   7.8  
AF548624-1|AAN59932.1|  558|Caenorhabditis elegans suppressor of...    28   7.8  

>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
           protein C14C10.4 protein.
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 479 NKMYLRTYGKKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKA 637
           N+M       KIV L     R ++ NE  T  +N++   PE A  + K+ K A
Sbjct: 632 NEMITLDMAAKIVQLLEDDPRVQLNNEELTDARNVLKSSPEKAELLGKLRKSA 684


>Z68106-1|CAA92124.1|  516|Caenorhabditis elegans Hypothetical
           protein F41E7.1 protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 605 AAKMFKILKKAPQFGCHGLGVVQDRLLSKNELFRVQP 715
           AAK+ K L+  P FGC  LG++   +   ++ F   P
Sbjct: 81  AAKISKALRLPPLFGCLALGIIIKNITVFDQFFVFPP 117


>Z79605-1|CAB01904.1|  719|Caenorhabditis elegans Hypothetical
           protein ZK678.1 protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 194 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 316
           R  I + R R PH  +Q+    S+PK+ PP +    P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712


>U10413-2|AAA20090.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 194 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 316
           R  I + R R PH  +Q+    S+PK+ PP +    P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712


>U10411-1|AAA20087.1|  719|Caenorhabditis elegans lin-15A protein
           protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 194 RGKINIQRPRLPHFERQLLLDLSKPKYGPPKY--TLPDFLLCD 316
           R  I + R R PH  +Q+    S+PK+ PP +    P+ LL D
Sbjct: 670 RRMIKVVRNRNPHLAKQVAAAPSEPKHIPPTHMEKKPEELLMD 712


>U53180-4|AAA96286.2|  558|Caenorhabditis elegans Suppressor of
           presenilin defectprotein 1 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 LCDR-GEKKNKTEIDNPFERILARECLEWFN 397
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


>AY160228-1|AAN62581.1|  558|Caenorhabditis elegans suppressor of
           presenilin 1 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 LCDR-GEKKNKTEIDNPFERILARECLEWFN 397
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


>AF548624-1|AAN59932.1|  558|Caenorhabditis elegans suppressor of
           presenilin defect protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 LCDR-GEKKNKTEIDNPFERILARECLEWFN 397
           +CD  GEK    +I+N   R   R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,087,459
Number of Sequences: 27780
Number of extensions: 372984
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)