Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0595
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.41
06_01_0350 + 2534422-2535615 31 0.54
12_02_0407 - 18654134-18654172,18654913-18655803 30 0.94
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 28 2.9
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 2.9
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 3.8
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 3.8
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 3.8
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 6.6
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 6.6
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 6.6
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 8.7
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 27 8.7
02_02_0590 - 11894721-11895188,11895684-11895851 27 8.7
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 0.41
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 264 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 106
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 105 SGHFGLPRRTLVFKDEGTI 49
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.54
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 166 PWNSNAQAEKKTLPGPLGGVFRP 98
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 23 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 187
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 28.3 bits (60), Expect = 2.9
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = -2
Query: 434 SRPNPTRPGPQSQSLFRSYG-SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPH 258
S P P R P SQS R+Y S+ P + Y + +SP+ + + ++S+ H
Sbjct: 301 SPPRPIRRHPSSQSTSRAYSISSAPRN--YNLQRYYTNSPYISTSRSNVDLANMSSQWSH 358
Query: 257 LNFQGPQRVSGHRRKCGALRVPNHI 183
P + S H + G L +P +I
Sbjct: 359 T----PHQASMHSLRSGHLSLPINI 379
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 350 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 225
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 433 PVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 323
P Q + A + A+P + V C LP P+LF L L
Sbjct: 293 PYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.9 bits (59), Expect = 3.8
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 176 EGRYGSEREEHRICGGVRILSADLENSGEGCT-WRC-RAGSYPYPQQVSKVKSL*SIE*C 349
+GR+G++R HR+ G +A SG+ C WR R +P P S++ +
Sbjct: 6 DGRFGNKRVHHRL--GPANGAASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPS 63
Query: 350 R*GKSANWIRNFGIRIGSEDRGVSGLDG 433
+ G N RN G RG G G
Sbjct: 64 QSGGGGNVWRN-PHSGGGGGRGAGGAGG 90
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 303 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 172
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 6.6
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 2 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 181
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 182 RYGS-EREEH 208
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 427 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 296
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 264 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 172
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 166 PWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 8
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 430 VQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 320
++T A L+++P S+ R+PLP R+EAL+
Sbjct: 110 LETIIARNLKSSPLSQQVTRALRIPLPRTLKRIEALN 146
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 50 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 148
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,145
Number of Sequences: 37544
Number of extensions: 325085
Number of successful extensions: 1122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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