Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0592
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.6  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   6.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.0  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 557  KFNFVKSQMVQVAPLDTMRQKNNSRSTAWESSEAR 453
            K N +K   +  A L ++ + NNS STA ++++++
Sbjct: 1792 KTNLLKENSILQADLQSLSRVNNSSSTAQQNAQSQ 1826


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 434 EKLSSAAVLRKIPMQLTLNYFFVSWCLRALPAP 532
           EK+ S  VLR + +Q+    F + WC  A+P P
Sbjct: 93  EKILSNFVLRNLMLQVLAPCFVLLWC--AVPMP 123


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 565 DIKSFSEIVQKFHFD*FENIVEHCNYGECILISFQVYKSWLELKFI 702
           DI ++    ++FHF   ENI +       +L   ++Y S +E+K +
Sbjct: 61  DIFNYEYYDERFHFCRPENIAKQSESLGSVLFGDRLYNSPIEIKML 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,095
Number of Sequences: 5004
Number of extensions: 54049
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)