Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0592
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0247 - 1632425-1632646,1632873-1632958,1633209-1633332,163...    29   3.6  
08_02_0719 + 20388246-20390756,20391159-20391263                       29   4.8  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    28   8.4  

>02_01_0247 -
           1632425-1632646,1632873-1632958,1633209-1633332,
           1633622-1633729,1634297-1634378,1634718-1634770,
           1634866-1634949,1635092-1635249,1635326-1635805,
           1636340-1636709
          Length = 588

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 325 STEGFSVIARINSIKFHKTNSPKT*KALFK 236
           S EGFSVI     + F  T +P+T +++ K
Sbjct: 489 SREGFSVIVNAQELGFESTETPRTDRSVLK 518


>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 190 VKQRTAGAVIEIYLIIIFQVLSEDRSKNYKIHDKLRCLIQ 71
           V ++    +++++++++       R KNYK+HD +  +IQ
Sbjct: 462 VAEKYLSDLVDLHVLMVEDSYKYGRPKNYKVHDLMHQVIQ 501


>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
            2907650-2907790,2907870-2908043,2908577-2908851,
            2909592-2909755,2910409-2910536,2910628-2910734,
            2911747-2911880,2912266-2912441,2912530-2914257,
            2915084-2915239,2915328-2915486,2915581-2915751,
            2915931-2916047,2916417-2916473,2916565-2916680,
            2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 541  FTKLNLIFDIKSFSEIVQKFHFD*FENIVEHCNYGE 648
            FT+  LI  +K F +  +K H D    +V  C++G+
Sbjct: 1285 FTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGK 1320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,455,157
Number of Sequences: 37544
Number of extensions: 297581
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)