Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0592
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine re...    28   5.7  
U88170-10|AAB42242.2|  340|Caenorhabditis elegans Serpentine rec...    28   7.5  
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF038618-3|AAB92073.1|  572|Caenorhabditis elegans Hypothetical
           protein F42G8.7 protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
 Frame = -1

Query: 166 VIEIYLIIIFQVLSEDRSKNY--KIHDKLRCLIQVITTGT 53
           V+EI+ + IFQ +++  + N+  K+H+KL  LIQ I T T
Sbjct: 343 VLEIHNLNIFQFVADLFNDNHHRKLHEKLNELIQKIVTET 382


>AF000261-6|AAB52928.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein97 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 538 LFTKLNLIFDIKSFSEIVQKFHFD*FENIVEHCNYGECILISF 666
           L   +N ++    FS+I+ +F F  F N++ H   G CI++ F
Sbjct: 249 LIDTINSMYIYSWFSDILWQFFFTIFSNLMVHVTDG-CIMLFF 290


>U88170-10|AAB42242.2|  340|Caenorhabditis elegans Serpentine
           receptor, class h protein50 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 LCFTSFVYSGILWAQIKLYLNR 245
           +C   FVYSGI  A I L+ NR
Sbjct: 108 MCIVHFVYSGIATAAIALFENR 129


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 166 VIEIYLIIIFQVLSEDRSKNYKIHDKLRCLIQ 71
           ++ IY+ ++++ L  DR K Y   D+L CLI+
Sbjct: 362 LMTIYVDLLYRTLEADRFKRYNA-DQLLCLIE 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,785
Number of Sequences: 27780
Number of extensions: 287984
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)