Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0592
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32700.1 68414.m04032 zinc-binding family protein similar to ...    28   5.3  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    28   7.0  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    27   9.2  

>At1g32700.1 68414.m04032 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 213

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 427 VR*KAFVRCRASEDSHAVDLELFFCLMVSKGATCTI 534
           +R K FV+C+   DSH  +  + +CL  + G  C++
Sbjct: 19  LREKFFVQCKLHADSHKSECNM-YCLDCTNGPLCSL 53


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 541 FTKLNLIFDIKSFSEIVQKFHFD*FENIVEHCNYGE 648
           FT+  LI   K F +  +K H D    +V  C++G+
Sbjct: 45  FTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGK 80


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 176 GPLFYKLCLLWDFMGSDKVILEQSFSGLRAVCFMKFN*IDSSY 304
           G +    C   DF+ SD+++ E    GLR   +   N ID+ Y
Sbjct: 279 GTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKY 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,017,420
Number of Sequences: 28952
Number of extensions: 266492
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)