Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0589
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.6  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   2.2  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.9  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   3.8  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   3.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   5.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   5.0  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.6  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   8.8  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   8.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   8.8  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   8.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +3

Query: 24  VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEK 194
           VD ++K+   S ED++ E  + +L  G E + SSQ +   + ET  K P P+ + IE   
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPPSPEVEKIETST 200

Query: 195 EKNNS 209
              N+
Sbjct: 201 SVENA 205


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +3

Query: 54  SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 197
           ++EDVA+++T+  K++F DG+ K ++     T  ++K    D+DA  A  E
Sbjct: 22  ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 481 IRGCCTSPLPRQGCHCTK 428
           +R C +SP PRQG  C K
Sbjct: 70  VRDCPSSPNPRQGAECYK 87


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 590 HRKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAGLPLYKNKNKTC 411
           + + G Y  I  I  VYG+H L+ G    L   F    G+ +VA  Q    L ++     
Sbjct: 57  YSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHET 115

Query: 410 NGRR 399
           + RR
Sbjct: 116 HARR 119


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 280 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 420
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 179 YRSGEGKEQFLNGI-ENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 313
           +R  E  E+ L  I ENF+  + +  E  E+  L     +EQEK+A
Sbjct: 440 FRPVEEMEKELQKIRENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 310 SLNHYFITVTRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYNGNPAWAMATYSNPGFYS 489
           +LN Y I+     +   SP   I   +I    PL +      +GNP   + +   PG YS
Sbjct: 218 NLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPICFLDSAKKPGRYS 277


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 42  IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 170
           + L S ED+ +  T+ S+   + +    +++HT  + K  +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 457 MATYSNPGFYSNPNDKSRLTPINSEWTP 540
           +++YS+P     P+  S  +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 129 LKHTETQEKNPLPDKDAIEAEKEKNNS 209
           ++     E+N  P+ + +E EKE+NN+
Sbjct: 420 VEQINVNEENNTPETEGLEDEKEENNT 446


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 85  WVFSVATSSADGSTIFSLVSTSRRQL 8
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 85  WVFSVATSSADGSTIFSLVSTSRRQL 8
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 143
           LP +ED+   +   SL D   + D+SQL   E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +3

Query: 54  SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNNS 209
           S++  AT+     + + +  +DSS      ++ K P+    + E+E E+  S
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEEQIS 163


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 85  WVFSVATSSADGSTIFSLVSTSRRQL 8
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  QKSLFDGIEKFDSSQLKHTETQEKNPLPD 170
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 24  VDTNEKIVLPSAEDVATEKTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 200
           VD    +   S  +  T+  Q +    G+E     +  H  T  +N LP+    E E +K
Sbjct: 353 VDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNSLPNNTTKELEMKK 412


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 85  WVFSVATSSADGSTIFSLVSTSRRQL 8
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,143
Number of Sequences: 5004
Number of extensions: 55554
Number of successful extensions: 163
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)