Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0589
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0355 + 19822110-19824491                                         30   2.3  
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775...    29   4.0  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     29   5.2  
06_03_0165 - 17399535-17400178,17400378-17400522                       28   6.9  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    28   9.2  

>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 185
           + +V    +++LP+ E+VATE    +    +E  D+  L  T     +E   +P+ D  E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261

Query: 186 AEKEKNNS*T 215
           A+ ++ N  T
Sbjct: 262 ADGDEENDAT 271


>07_03_0735 +
           21075033-21075846,21077065-21077199,21077384-21077517,
           21077604-21077814,21078033-21078270,21078346-21078496,
           21078593-21078931
          Length = 673

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 39  KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 158
           K VLPS E++A ++   S   GIE+  +  +   + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 122 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 205
           +P  A  D  E   +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 433 YNGNPAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 540
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 168 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDS 10
           P++ SSP    AS+ S    R  R ++SGS + +    +     H  +  G S
Sbjct: 33  PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRS 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,452
Number of Sequences: 37544
Number of extensions: 331227
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)