Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0589
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    60   2e-09
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    30   1.8  
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)                   30   2.3  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  29   5.4  
SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)                    29   5.4  
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                      29   5.4  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   9.4  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   28   9.4  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = +3

Query: 9   SCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEA 188
           S L+ V+T EK  LP+ + +A EK + + F G+E F  ++LKH ET EKNPLPD   I A
Sbjct: 460 SKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRA 518

Query: 189 E 191
           E
Sbjct: 519 E 519



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 28/64 (43%), Positives = 40/64 (62%)
 Frame = +3

Query: 3   NTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAI 182
           + S L+ V+  EK  LP+ +D+ TE T+      ++ FD S+LKH +T+EKNPLPD   I
Sbjct: 687 DASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTI 744

Query: 183 EAEK 194
             EK
Sbjct: 745 AQEK 748



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIEA 188
           L+ V+T EK  LP A+++  E   + L D  E  KFD+S+LKH ET+EK  +P KD IEA
Sbjct: 499 LKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEA 558

Query: 189 E 191
           E
Sbjct: 559 E 559



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = +3

Query: 9   SCLRDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKFDSSQLKHTETQEKNPLPDKDAI 182
           S L+ V+T EK  LPSA  +  E   + L D   +  FD+S+LKH E QEKNPLP KD I
Sbjct: 649 SKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDI 708

Query: 183 EAEKEKNNS 209
             E  +  +
Sbjct: 709 TTESTETRA 717



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +3

Query: 3   NTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAI 182
           +TS L+ V+T EK+V+P+ + +  E         ++ FD S+LKH  TQEKNPLP    +
Sbjct: 535 DTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTL 592

Query: 183 EAE 191
             E
Sbjct: 593 HEE 595



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAE 191
           L+ V T EK ++PS ED+  E         ++ FD S+LKH ET EKNPLP    ++ E
Sbjct: 615 LKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEE 671



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIEA 188
           L+ V T EK  LPS E +  E       D  E   F+ S+L+H ET+EKN LP KD I  
Sbjct: 422 LKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIAD 481

Query: 189 EK 194
           EK
Sbjct: 482 EK 483



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +2

Query: 209 LNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 310
           ++ + +FD +KLKH E  EKNPLPTKD I  E +
Sbjct: 680 VSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQEK 307
           +++F+ +KL+H ET EKN LPTKD I  EK
Sbjct: 454 VKSFEKSKLQHVETKEKNTLPTKDTIADEK 483



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQE 304
           +++FD +KLKH ET EKNPLP+  V+++E
Sbjct: 643 VKSFDHSKLKHVETVEKNPLPSAAVLKEE 671



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 313
           ++ FD +KLKH +T EKNPLP    I QEK++
Sbjct: 719 VKTFDHSKLKHVQTEEKNPLPDAKTIAQEKAS 750



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQE 304
           +  FD +KLKH ET EK  +PTKDVIE E
Sbjct: 531 VAKFDTSKLKHVETKEKVVMPTKDVIEAE 559



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +3

Query: 27  DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAE 191
           DT ++I  P +E    +   K     + KFD++ LKH +T+EKN LP  + I+ E
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQE 442



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   SCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAI 182
           S L+ V T EK  LP+ + +  E   K+  D  E   FD ++LKH  TQEK+ +P ++ I
Sbjct: 573 SKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDI 632

Query: 183 EAE 191
           + E
Sbjct: 633 KEE 635



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 83  PEVFIRRYREV*FEPAEA-HRDSGEEPASGQRRYRSGEGKEQFLNGIENFDPTKLKHTET 259
           P+ F  R     FE ++  H ++ E+     +   + E +    +G+E F   KLKH ET
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPFSGVEVFQKNKLKHVET 504

Query: 260 CEKNPLPTKDVIEQE 304
            EKNPLP    I  E
Sbjct: 505 LEKNPLPDAQNIRAE 519



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQE 304
           +++FD +KLKH  T EKNPLPT   + +E
Sbjct: 567 VKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595



 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 194 GKEQFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 304
           G +  ++ +  FD   LKH +T EKN LP+ + I+QE
Sbjct: 406 GSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQE 442



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQE 304
           + +FD TKLKH  T EK+ +P+++ I++E
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEE 635


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
 Frame = +3

Query: 15   LRDVDTNEKIVLPSAEDV------ATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLP 167
            ++D+ T E+++   AED       A E  ++++F+  EK +S    + + TE Q+K    
Sbjct: 1137 MKDLTTEEELIASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDE 1196

Query: 168  DKDAIEAEKEKNNS 209
            +   +EAE E+  S
Sbjct: 1197 EIRRLEAELEEERS 1210


>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
          Length = 385

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 48  LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 167
           L S  D   EKT     D +E+F S   +H  T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 377 LM*VRSICVVHYKFYFCFCTMATLPG 454
           L+ V  IC VH  FY+C C  +++ G
Sbjct: 55  LVAVLRICSVHLDFYYCTCVWSSMAG 80


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 21  DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 197
           DV      + P+    A EKT K + DG +EK+     +  +T   + L D D  E + +
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDDVEEEDDD 400


>SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)
          Length = 363

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 143 DSGEEPASGQRRYRSGEGKEQFLNGIENFDPTKLKHTETCEKNPLPTK 286
           +S    A   + +RS +GK+      E+  P K+K   TCE + +P K
Sbjct: 21  ESSASFAQALKEWRSAQGKDNTWVNPEDSQPAKVK-VATCETSTVPEK 67


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 334 VTRKCISLVSPYFNIDVSQIDL 399
           +  KC  L+SPY ++D+   DL
Sbjct: 13  IAAKCTQLISPYLDLDIKYFDL 34


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 57   AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 194
            ++D   EKT+ S+ +  +  DSS      T+EK    +KD    E+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLER 1591


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 119 FEPAEAHRDSGEEPASGQRRYRSGEG 196
           FEP E H DSG+E       Y   EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,653,305
Number of Sequences: 59808
Number of extensions: 396887
Number of successful extensions: 1190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)