Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0589
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    55   5e-08
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    29   4.7  
Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 29/60 (48%), Positives = 32/60 (53%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 194
           L      EKIVLPSA+D+  EK    L D I  F S  LK TET EKN LP    +  EK
Sbjct: 62  LHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREK 121



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 29/61 (47%), Positives = 37/61 (60%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEK 194
           L+ V+T EK VLP+ EDVA EK        IE FDS++L  T  +EK  LP  D I+ EK
Sbjct: 24  LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83

Query: 195 E 197
           +
Sbjct: 84  Q 84



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 21/44 (47%), Positives = 24/44 (54%)
 Frame = +3

Query: 15  LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET 146
           L+  +T EK VLPS  DVA EKT +        FD S L H ET
Sbjct: 100 LKKTETIEKNVLPSPTDVAREKTLQM----AASFDKSALHHVET 139



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 209 LNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 307
           ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 218 IENFDPTKLKHTETCEKNPLPTKDVIEQEKS 310
           I NF    LK TET EKN LP+   + +EK+
Sbjct: 92  INNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 239 KLKHTETCEKNPLPTKDVIEQEK 307
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 QLKHTETQEKNPLPDKDAIEAEKE 197
           +LK  ET EKN LP K+ +  EK+
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQ 46


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 408 ITSFIFVFVQWQPCLGNGDVQQPRILFKS*R*VTPYANKQRVDAINRSNTDN 563
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 165 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 13
           EA  S +S  + AG      Y   K   S  W+  ++  ++++    +H D
Sbjct: 51  EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101


>Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 165 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 13
           EA  S +S  + AG      Y   K   S  W+  ++  ++++    +H D
Sbjct: 51  EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101


>Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 165 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 13
           EA  S +S  + AG      Y   K   S  W+  ++  ++++    +H D
Sbjct: 51  EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101


>Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 165 EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGD 13
           EA  S +S  + AG      Y   K   S  W+  ++  ++++    +H D
Sbjct: 51  EASDSTKSLTSDAGDAILGAYDAAKEKASDAWESTKEMVSEAYEQAEKHAD 101


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 177 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 61
           R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 73  RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 177 RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRL 61
           R  P++GSS E+  + +  +  S  R + TS SSQ+ ++
Sbjct: 73  RSLPKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,202
Number of Sequences: 27780
Number of extensions: 308170
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)