Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0589
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    30   1.4  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    29   4.4  
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P...    29   4.4  
At1g56660.1 68414.m06516 expressed protein                             29   4.4  
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1...    28   7.7  

>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 60  EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 203
           EDV  EK      D +++ D  Q +   ++EK    +KD  E EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689


>At3g57300.1 68416.m06378 transcriptional activator, putative similar
            to transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1507

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 140  RDSGEEPASGQRRYRSGEGKEQFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 310
            +D+G+EP     + +S   K +  +  +   P K K     E  P  TK V  Q KS
Sbjct: 1424 QDNGQEPLEEPEKPKSSNKKRRAASNPKARAPQKAKEEANGEDTPQRTKRVKRQTKS 1480


>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 808

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 9   SCLRDVDTNEKIVLPSAEDVATEKT---QKSLFDGIEKFDSSQLKHTETQEKNPLPDKDA 179
           S  +  D+ EK   PS E V T       +S  + + + DS+  K+   + +  + + ++
Sbjct: 504 STAKSTDSTEKS--PSKESVVTVDAGVPDESAVEKVIEADSNIEKNDSLEPEKKITEGES 561

Query: 180 IEAEKEKNNS*TASRTSIPL 239
           I  +KE N+S    +  +P+
Sbjct: 562 ITEDKEANSSNAGGKRKVPM 581


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 60  EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNN 206
           EDV+ EK +    DG +K    +   + T+EK   P K+  + E+ K+N
Sbjct: 160 EDVSQEKEELEEEDG-KKNKKKEKDESGTEEKKKKPKKEKKQKEESKSN 207


>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
           [Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
           Pfam domains, PF00439: Bromodomain and PF00240:
           Ubiquitin family
          Length = 1919

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 24  VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 200
           V + E  +LP  E  +T     SL      FD       E QE+   P + ++E EK +
Sbjct: 112 VVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKRE 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,960
Number of Sequences: 28952
Number of extensions: 278210
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)