Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0588
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 30 0.33
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 29 1.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 3.1
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 27 4.0
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 7.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 26 7.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 9.4
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 25 9.4
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +1
Query: 412 KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLN 591
KH N S QK EW R N +++ IN+ D + Q HD + + M TL
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTK---QPKMHDFRQPLHPNPMTTLK 765
Query: 592 FEDAQNSVNLLNSAI 636
+ NS + S +
Sbjct: 766 RKGQHNSFSYDKSTL 780
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/67 (17%), Positives = 34/67 (50%)
Frame = +1
Query: 496 INAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPKIVD 675
+ + ++DK+RL + ++ Y+T + L E++ +N + K+P++V+
Sbjct: 296 VESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEK-AIAKVPEVVE 354
Query: 676 TGSFQDF 696
+++ +
Sbjct: 355 KNAWRRY 361
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 764 RRCVKWYSPLTFKNRVH*STAFGKSWKLPVSTIFGILPWVKLEMAEF 624
R+ V W+ T ST +G+SWK + PW L +A F
Sbjct: 2143 RKLVLWFFVATILQNYWLSTLYGRSWKYLWGGSL-LAPWKMLTIAFF 2188
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 541 FHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIP 663
F AK +Y+T I+L S+++LN S + G IP
Sbjct: 259 FKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIP 299
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 463 RVNTNTIELAKINAIIVDKQRLPQQDFHDN---AKTYYETDMITLNFEDAQNSVNLLN 627
R N+N E+ ++NAI++D + Q F N + Y D + E+ + + +L+N
Sbjct: 254 RPNSNPFEVCELNAILLDAKIQNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLIN 311
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +1
Query: 382 QINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKT 561
++ H + Q R++F K WL NT+ +K + + K + ++ KT
Sbjct: 78 KLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKES---LQKDEAEYVELANSLKT 134
Query: 562 YYETDM 579
ET++
Sbjct: 135 KVETNI 140
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +1
Query: 340 LAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVD- 516
+A++ E + L + NV + + + + +NT +ELA +N +V
Sbjct: 535 MAMLRESYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVKQ 594
Query: 517 -KQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISN 642
+ R+P ++ + T IT + ++ +S+N L + SN
Sbjct: 595 IQHRVPPENQSNLEHT------ITTSSKNTTSSINPLTAVSSN 631
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 238 EKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHA 396
EKIG F ++ T+N S+G I+ ++ ++ V SG R + A
Sbjct: 114 EKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGENRLEYRRA 166
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 699 WEVLETTGVNYLWYFTMGEVGDG*IQ*INRVLCIFEVKCYH---ISFIIGLCIVMKVLLW 529
W+ E + LW + + + + ++ CIF H ISF + L +M+ +W
Sbjct: 558 WQFREHRILKQLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGISFFVTLAEIMRRCMW 617
Query: 528 QTLLIDNNGI 499
L +++ I
Sbjct: 618 NILRVEHEEI 627
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 609 VLCIFEVKCYHISFIIGLCIVMKVLLW 529
++C+ E Y IS ++ LC+ M W
Sbjct: 130 LICLVETTVYQISVVLLLCLTMGWKSW 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,853
Number of Sequences: 5004
Number of extensions: 70792
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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