Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0588
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 38 0.009
04_04_0619 + 26652923-26653267,26653440-26654273 35 0.085
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783... 34 0.15
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 33 0.20
11_01_0771 + 6453130-6454488 33 0.26
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 30 2.4
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 30 2.4
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 4.2
09_03_0112 - 12448874-12449398 28 7.4
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 28 9.7
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 28 9.7
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 9.7
>01_01_1152 + 9170628-9171899
Length = 423
Score = 37.9 bits (84), Expect = 0.009
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Frame = +1
Query: 304 NLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTI 483
N I+SP++ LA++A+GA G T+R++ L + RS ++ LR NT
Sbjct: 60 NFIVSPLSFHAALALVADGARGETQRELLGFLG-SPSLAELHRSPTTRLVARLRHLPNT- 117
Query: 484 ELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNF-EDAQNSVNLLNSAISNFTHGKI 660
+ + VD+ R +F D A + Y +F + + +N+ +S+ T G I
Sbjct: 118 --SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 661 -----PKIVDTGSFQDFPNAV 708
P VD+ + NAV
Sbjct: 176 RDVLPPNSVDSSTVVVLANAV 196
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 726 FKGQWTIPFNTSSTSKLPFY 785
FKG W++PF+ S+T PF+
Sbjct: 198 FKGTWSLPFHPSATFHAPFH 217
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 34.7 bits (76), Expect = 0.085
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 298 KGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTN 477
+ N + SP+ + LA++A G G T RQ+ L ++H + + + +R
Sbjct: 19 QSNFMFSPLGLRAGLALLATGTDGETLRQL--LAFLGSQHIHQLNAASAGLLAEMRA--- 73
Query: 478 TIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNL-LNSAISNFTHG 654
+L+ I VD+ + +F A + +++F++ N+ +N IS T+G
Sbjct: 74 WPQLSFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNG 133
Query: 655 KIPKIVDTGSF 687
++ + G+F
Sbjct: 134 RLNNTISPGTF 144
>10_06_0099 -
10677024-10677073,10677894-10677998,10678254-10678315,
10678694-10679197,10679695-10680356,10680695-10680793,
10680881-10681110,10681227-10681278,10681391-10681577,
10681661-10681873,10682006-10682175,10683455-10683730,
10684188-10684643,10685527-10685766,10687517-10687771
Length = 1186
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 577 MITLNFEDAQNSVNLLNSAISNFTHGKIPKIVDTGSFQDF 696
M+ F + N V+ L +S F HGK P +D +F+DF
Sbjct: 284 MLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFEDF 323
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 154 LKFLVLAIVPLSFAQNIPKATN--LHNGLTEKIGNFSIELLYHTSNLEQSKGN 306
++FL I+P FA N+ K TN L L KIG+++I +L T E GN
Sbjct: 610 IQFLHGGIIPGLFANNL-KITNILLDQNLVAKIGSYNIPILSETMKSEGGSGN 661
>11_01_0771 + 6453130-6454488
Length = 452
Score = 33.1 bits (72), Expect = 0.26
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 726 FKGQWTIPFNTSSTSKLPFY 785
FKG+W PFN S T + PFY
Sbjct: 212 FKGKWDRPFNESDTERKPFY 231
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 390 IDLPSRIPRRAFSYYRQNSPNGDW 319
+ LP +P+R F Y R GDW
Sbjct: 677 VRLPGTLPQRVFDYLRDEQRRGDW 700
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 346 VIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRV-NTNTIELAKINAIIVDKQ 522
++ GN I + L H + T+S Q S LRV N + +A ++ +Q
Sbjct: 287 ILQPALGGNANTAIICNITLAQVHADETKSSLQFASRALRVTNCACVNEILTDAALLKRQ 346
Query: 523 RLPQQDFHDNAKTYYETDMITLNFEDAQNS 612
R ++ ++ E + I+L E+ + +
Sbjct: 347 RKEIEELRAKLRSELEKERISLELEEEKKA 376
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 298 KGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTN 477
KG L+ T W I E R ++NH L ++ ++ E +K +E LRV
Sbjct: 462 KGPLVKQD-TEWAKQLSIKEDEITMLREKLNHVLNIENLGSDAVYLELEKENELLRVKIQ 520
Query: 478 TIE 486
+E
Sbjct: 521 ELE 523
>09_03_0112 - 12448874-12449398
Length = 174
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 392 TRYGYKQSIRTSLEANSKKSQNGSESTRTQ*NSPKSMPLLSISNVCHNKTFMTMQR 559
TRY +K S+ SK G E T+ K+ ++IS C+N++ TM+R
Sbjct: 71 TRYPFKLDCM-SVGGTSKPFFRGMEVTKISLADGKAWMKMNISQNCYNQSTGTMER 125
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 318 RHNQVTFTLLQIRGVIQ*FNRKISNLLGEPIV-EISRLRNILSE 190
RH+ FT+L GV+ N+ +GE +V E+S L+ +++E
Sbjct: 429 RHSMSPFTVLSNLGVVSPINKGERLFVGEIVVGEMSALQKVVNE 472
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 318 RHNQVTFTLLQIRGVIQ*FNRKISNLLGEPIV-EISRLRNILSE 190
RH+ FT+L GV+ N+ +GE +V E+S L+ +++E
Sbjct: 427 RHSMSPFTVLSNLGVVSPINKGERLFVGEIVVGEMSALQKVVTE 470
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = +1
Query: 220 LHNGLTEKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHAL 399
++ GL + G+F N+ Q N+IMS WT + + + + +NH
Sbjct: 34 VYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMWWTERRIFSGQQEIDLLKNLNHKN 93
Query: 400 RLQAKHTNVTRSEFQKISEWLRVNTNTIELAKIN 501
++ + TRS I E++ N + + K N
Sbjct: 94 IVKYLGSLKTRSHLHIILEYVE-NGSLANIIKPN 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,609,011
Number of Sequences: 37544
Number of extensions: 414729
Number of successful extensions: 1002
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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