Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0588
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     33   0.20 
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)             31   0.80 
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       30   1.9  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024)                  29   4.3  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  

>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +1

Query: 283  NLEQSKGNLIMSPITVWTVLAVIAEGASGNTRR---QINHALRLQAKHTNVTRS-EFQKI 450
            ++   + + IM    + + ++V +E  SG  R    QINH  +  A+HT+VTRS + + +
Sbjct: 1352 DIPMGRSSPIMEEPRIPSRISVASESHSGRLRHTAIQINHPFQRAAQHTDVTRSHDPEVV 1411

Query: 451  SEWLRVNTNTIEL-AKI 498
             E LR+    +   AKI
Sbjct: 1412 KEVLRLQERILRFQAKI 1428


>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
          Length = 1060

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
 Frame = +1

Query: 223 HNGLTEKIGNFSIELLYHTSNLEQSKGNLIMSPI------TVWTVLAVIAEGASGNTRRQ 384
           HNGL++   N   ++LYH      +    ++  I       +W VL V  E  S N   Q
Sbjct: 314 HNGLSQGEKNAGFDVLYHNMKYGNNASTKLVEFIRERTFEPLWGVLRVATEKLS-NAHHQ 372

Query: 385 INHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHD 549
           +   +RLQ     +     ++            + A+    +V+K+ + + DFHD
Sbjct: 373 V--VVRLQELVKEIKEYGDKQKERHKAAEAKMKKAAEEYKALVEKREIIRNDFHD 425


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 375 ETADQSRVTATSKAYERHSKRIPKNLRMAPSQHEHNRTRQNQCHYCR*ATFATTRLS*QC 554
           E +DQ +     +A ++    I  N     S+H HNR R+  C   R   F  TR    C
Sbjct: 304 EKSDQLQAVQPRQAGKKFDNFIVHN----KSEHNHNRKRKKNCQARRVYRFVPTRKKKHC 359

Query: 555 K 557
           K
Sbjct: 360 K 360


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 532 QQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPKIV 672
           Q+  HDN K     +    N+  A+N V+L+N  ISN    KIP+ +
Sbjct: 241 QESLHDNEKQLKYEEYC--NY--AKNLVDLVNDVISNLEKQKIPRTI 283


>SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024)
          Length = 286

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 613 VNLLNSAISNFTHGKIPKIVDTGSFQDFPNAVD*CTLFLKVSGLYHLTHR 762
           +   NS+++ FTH KI +         FP  +  C + L +S   H+T R
Sbjct: 91  IEFQNSSLAVFTHSKIIEEYQASDRHSFPKLIIPCVIQLLLSPGSHVTVR 140


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 361  ASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINA 504
            A G   R  N   RL + H N+     Q+IS  L +NT   EL  ++A
Sbjct: 973  ALGEMLRHNNTITRLTSIHGNIGDLGAQRISNGLALNTKVTELILVDA 1020



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 361  ASGNTRRQINHALRLQAKHT--NVTRSEFQKISEWLRVNTNTIELAKINA 504
            A G   R  N   RL + H+  N+     Q+IS+ L +NT   EL  +NA
Sbjct: 2285 AFGEMLRHNNTITRLTSIHSHGNIVDLGAQRISDGLALNTKVTELTLVNA 2334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,481,114
Number of Sequences: 59808
Number of extensions: 498602
Number of successful extensions: 1342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)