Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0588
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or cys... 65 6e-11
AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin prote... 65 6e-11
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 56 2e-08
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 56 2e-08
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 56 3e-08
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 56 3e-08
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 48 8e-06
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 48 8e-06
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 29 2.9
>AY525078-1|AAS13527.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/128 (25%), Positives = 66/128 (51%)
Frame = +1
Query: 310 IMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIEL 489
+ SP+++ LA++ GA G+TR I +++ + F I++ L + N +E
Sbjct: 32 VFSPVSILLSLALVHLGAKGHTRHDIRNSV-VNGSTDEQFIEHFSFINKLLNSSVNDVET 90
Query: 490 AKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPKI 669
N + V ++ ++ F D + +Y + T++F+ +Q + ++N IS T GKIP +
Sbjct: 91 LIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISESTKGKIPDM 150
Query: 670 VDTGSFQD 693
+ + +D
Sbjct: 151 IKPDNLKD 158
>AF026209-12|AAB71272.1| 366|Caenorhabditis elegans Serpin protein
1 protein.
Length = 366
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/128 (25%), Positives = 66/128 (51%)
Frame = +1
Query: 310 IMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIEL 489
+ SP+++ LA++ GA G+TR I +++ + F I++ L + N +E
Sbjct: 32 VFSPVSILLSLALVHLGAKGHTRHDIRNSV-VNGSTDEQFIEHFSFINKLLNSSVNDVET 90
Query: 490 AKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIPKI 669
N + V ++ ++ F D + +Y + T++F+ +Q + ++N IS T GKIP +
Sbjct: 91 LIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAAKIMNQFISESTKGKIPDM 150
Query: 670 VDTGSFQD 693
+ + +D
Sbjct: 151 IKPDNLKD 158
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 56.4 bits (130), Expect = 2e-08
Identities = 42/148 (28%), Positives = 66/148 (44%)
Frame = +1
Query: 250 NFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVT 429
+F + LL NL +S + SP+++ L+++ A G TR +I AL L
Sbjct: 19 DFGLSLL-RQQNLTES---FVFSPLSIALALSLVHVAAKGETRDEIRKAL-LNGATDEEL 73
Query: 430 RSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQN 609
F IS L V E+ N I K ++ + ++ K Y LNFED +
Sbjct: 74 EQHFSNISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEA 133
Query: 610 SVNLLNSAISNFTHGKIPKIVDTGSFQD 693
S +N+ +S T G I KI++ S +
Sbjct: 134 SAEAINNFVSENTKGHIKKIINPDSISE 161
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 56.4 bits (130), Expect = 2e-08
Identities = 42/148 (28%), Positives = 66/148 (44%)
Frame = +1
Query: 250 NFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVT 429
+F + LL NL +S + SP+++ L+++ A G TR +I AL L
Sbjct: 19 DFGLSLL-RQQNLTES---FVFSPLSIALALSLVHVAAKGETRDEIRKAL-LNGATDEEL 73
Query: 430 RSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQN 609
F IS L V E+ N I K ++ + ++ K Y LNFED +
Sbjct: 74 EQHFSNISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEA 133
Query: 610 SVNLLNSAISNFTHGKIPKIVDTGSFQD 693
S +N+ +S T G I KI++ S +
Sbjct: 134 SAEAINNFVSENTKGHIKKIINPDSISE 161
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/145 (24%), Positives = 75/145 (51%)
Frame = +1
Query: 250 NFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVT 429
+F+++LL + L S G++++SP+++ LA+I GA G+T++++ L +
Sbjct: 10 DFALKLL---ATLPHS-GSVVLSPLSISLGLALIHAGACGSTQKELEDVLG-----GSRI 60
Query: 430 RSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQN 609
EF + E + N +E +N + V++ QD+ + + Y+ +L+F +
Sbjct: 61 FEEFSGLMEAVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQ 120
Query: 610 SVNLLNSAISNFTHGKIPKIVDTGS 684
+ +N+ + N T+GKI ++ S
Sbjct: 121 AAKTMNTFVENHTNGKIKDLIPADS 145
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 56.0 bits (129), Expect = 3e-08
Identities = 35/145 (24%), Positives = 75/145 (51%)
Frame = +1
Query: 250 NFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVT 429
+F+++LL + L S G++++SP+++ LA+I GA G+T++++ L +
Sbjct: 10 DFALKLL---ATLPHS-GSVVLSPLSISLGLALIHAGACGSTQKELEDVLG-----GSRI 60
Query: 430 RSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQN 609
EF + E + N +E +N + V++ QD+ + + Y+ +L+F +
Sbjct: 61 FEEFSGLMEAVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQ 120
Query: 610 SVNLLNSAISNFTHGKIPKIVDTGS 684
+ +N+ + N T+GKI ++ S
Sbjct: 121 AAKTMNTFVENHTNGKIKDLIPADS 145
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 48.0 bits (109), Expect = 8e-06
Identities = 33/130 (25%), Positives = 61/130 (46%)
Frame = +1
Query: 304 NLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTI 483
+L+ SP+++ VL+++ G G++R QI + L A + F +S+ ++ T +
Sbjct: 23 SLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVE-HFSFVSKEVKNGTKGV 81
Query: 484 ELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIP 663
E+ N + + K F A Y D +L+ +V +NS ++ T+GKI
Sbjct: 82 EVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLTTPA-AVQEINSFVNTATNGKIK 140
Query: 664 KIVDTGSFQD 693
I S +D
Sbjct: 141 NIATQDSIKD 150
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 48.0 bits (109), Expect = 8e-06
Identities = 33/130 (25%), Positives = 61/130 (46%)
Frame = +1
Query: 304 NLIMSPITVWTVLAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTI 483
+L+ SP+++ VL+++ G G++R QI + L A + F +S+ ++ T +
Sbjct: 23 SLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLVE-HFSFVSKEVKNGTKGV 81
Query: 484 ELAKINAIIVDKQRLPQQDFHDNAKTYYETDMITLNFEDAQNSVNLLNSAISNFTHGKIP 663
E+ N + + K F A Y D +L+ +V +NS ++ T+GKI
Sbjct: 82 EVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLTTPA-AVQEINSFVNTATNGKIK 140
Query: 664 KIVDTGSFQD 693
I S +D
Sbjct: 141 NIATQDSIKD 150
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 340 LAVIAEGASGNTRRQINHALRLQAKHTNVTRSEFQKISEWLRVNTNTIELAKINAI 507
LAV G S +RLQ + N + S+ QKI +W + N++ LA + I
Sbjct: 775 LAVHVVGDSNEVTVPAVRVVRLQVDYRNASVSDLQKIHKWNAIMRNSV-LASLKFI 829
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,042
Number of Sequences: 27780
Number of extensions: 386393
Number of successful extensions: 1182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -