Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0588
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 557 FALS*KSCCGKRCLSTIMALILASSIVFVL 468
           F +S   CCG    S  M +  AS ++F+L
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFIL 92


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 224 WRLVALGIF*AKD 186
           WRLVA GI  AKD
Sbjct: 22  WRLVADGILNAKD 34


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 RSITRYGYKQSIRTSLEANSKKSQN 457
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 RSITRYGYKQSIRTSLEANSKKSQN 457
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 13/66 (19%), Positives = 28/66 (42%)
 Frame = +3

Query: 306 LDYVSNHRLDCFGGNS*RRVWEYETADQSRVTATSKAYERHSKRIPKNLRMAPSQHEHNR 485
           +D+  N  +D +  N      E  T +  ++    K+Y  +  +  K++ +  S    + 
Sbjct: 421 IDHAKNTIID-YRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSN 479

Query: 486 TRQNQC 503
           T +N C
Sbjct: 480 TVENAC 485


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 RSITRYGYKQSIRTSLEANSKKSQN 457
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,639
Number of Sequences: 438
Number of extensions: 5117
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)