Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    59   5e-10
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.65 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.0  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.6  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   3.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.0  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +2

Query: 380 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNI 529
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F+++  LL+ D WTVKN+
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNV 96



 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQSRVNRN--ESRLFW 650
           SGRLLVGLRW N    +G+S W+FE+      RN  + + FW
Sbjct: 97  SGRLLVGLRWRNETGVDGESIWIFESADPSRPRNAVDQKTFW 138


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 195  LNILNYIGIVGNPENSKGHIQSKSLSNIKCII 100
            L +L  IGI  +P+ SK HI+ KSL  + C I
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSLIIVVCSI 1176


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 138 CDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSD 239
           CDL +  ++LL+L NS  +T    +D   + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 YT*YLRVIWIVCDLSNFQDYLLFLYNS 185
           Y   LR+I+ + D S F+DYL F Y +
Sbjct: 813 YVMILRLIYGIVDQSAFEDYLRFYYGN 839


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 386 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNI 529
           Y+  F LV   +A++V    G     W S   I   V  +L+L A +W  KNI
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNI 277


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 561 WNYVDDNGKSPWVFEARQSRVN 626
           W  +D  GK PWV E    R N
Sbjct: 891 WRALDSLGKQPWVDEINARRAN 912


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 561  WNYVDDNGKSPWVFEARQSR 620
            W  +DD GK PW+ E    R
Sbjct: 1165 WRQLDDLGKKPWIDEIAAQR 1184


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 374 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 490
           F+HP+      +FRC  +  + L  + S SF  SF+  +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 505 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 386
           CR++    Y  C++  G P  Q   NY     H  ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,709
Number of Sequences: 5004
Number of extensions: 61618
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)