Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327...    56   3e-08
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342...    55   5e-08
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27...    28   6.3  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   6.3  
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    28   6.3  

>01_03_0129 +
           12831947-12832048,12832358-12832414,12832514-12832717,
           12832799-12832858,12835026-12835152,12835801-12835889
          Length = 212

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQ----SRVNRNESRLFW 650
           SGR+LVGLRWWN +DD G S W FE       +R+N+ +S LFW
Sbjct: 92  SGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFW 135



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +2

Query: 368 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNI 529
           + + +P   FFH++F+  A+  YIL   F  +F+  FV+ +LL + DFW VKN+
Sbjct: 38  ENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVKNV 91


>05_01_0432 +
           3428920-3428934,3429007-3429111,3429341-3429397,
           3429499-3429702,3429790-3429849,3430797-3430923,
           3431420-3431520
          Length = 222

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQ----SRVNRNESRLFW 650
           SGR+LVG+RWWN +DD G S W FE       +R+N+ +S LFW
Sbjct: 98  SGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFW 141



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 368 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNI 529
           + + +P    FH++F+  A++ YIL   F  SF+  FV+ + L + DFW VKN+
Sbjct: 44  ENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVKNV 97


>05_01_0040 -
           273384-273437,273920-274102,274465-274677,275479-276294,
           276431-276823,277233-277238
          Length = 554

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 356 PLHQMRWCHHQAAGPLPN 303
           PLH  +WCH   A PL N
Sbjct: 221 PLHSGQWCHDAEARPLSN 238


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 132 IVCDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSDTHLKLICE 263
           I+C+ + F+D LLFLY  + L   E+I  Y   +    L   C+
Sbjct: 696 IICNANAFKDGLLFLYEKLKLFK-EVISCYKQAHDHEGLIACCK 738


>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 610 VRAGSTGTRAACSGMGLTLCPLVW 681
           +RAG+ G+RA   G G  L PL W
Sbjct: 49  LRAGAAGSRAGVGGYGYLLEPLWW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,635,856
Number of Sequences: 37544
Number of extensions: 388755
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)