Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)               100   1e-21
SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score =  100 bits (240), Expect = 1e-21
 Identities = 41/70 (58%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
 Frame = +2

Query: 326 DDDTIAFGEEDNA--NKQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLL 499
           +D  + FG+E+ A   ++F HPY+ FFHL FR S++I Y+LCGWFSDSFI +FV+++LLL
Sbjct: 162 EDVALNFGDEEEALSRRKFRHPYVSFFHLFFRISSVIAYLLCGWFSDSFITNFVVIVLLL 221

Query: 500 SADFWTVKNI 529
           S DFWTVKN+
Sbjct: 222 SCDFWTVKNV 231



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 21/28 (75%), Positives = 26/28 (92%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQ 614
           SGRLLVGLRWWNYVD++G S WVFE+++
Sbjct: 232 SGRLLVGLRWWNYVDEDGNSHWVFESKK 259


>SB_9822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 117 LRVIWIVCDLSNFQDYLLFLYNSICLTAVEIIDQYLSTYSDTHLKL 254
           L+  +  C  S F D+LL +   +C+T V  +++Y S    TH +L
Sbjct: 78  LKASYAFCRASLFFDHLLKIATVLCMTGV-AVERYFSLARLTHRRL 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,711,808
Number of Sequences: 59808
Number of extensions: 455701
Number of successful extensions: 980
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)