Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1551|AAN11977.1|  215|Drosophila melanogaster CG5021-PB...   122   4e-28
AY071297-1|AAL48919.1|  223|Drosophila melanogaster RE32705p pro...   116   2e-26
AE014296-1550|AAF50344.2|  218|Drosophila melanogaster CG5021-PA...   116   2e-26

>AE014296-1551|AAN11977.1|  215|Drosophila melanogaster CG5021-PB,
           isoform B protein.
          Length = 215

 Score =  122 bits (295), Expect = 4e-28
 Identities = 56/83 (67%), Positives = 65/83 (78%), Gaps = 6/83 (7%)
 Frame = +2

Query: 299 MNSATVPLLDDDTIAFGEEDN------ANKQFVHPYIVFFHLVFRCSAIIVYILCGWFSD 460
           M SATVPLLDDDTI FGEED       A +++ HPY+ FFHL FR +AI++Y+ CGWFSD
Sbjct: 1   MASATVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGWFSD 60

Query: 461 SFIASFVLVILLLSADFWTVKNI 529
           SFI SFV V+L LSADFWTVKNI
Sbjct: 61  SFITSFVFVVLFLSADFWTVKNI 83



 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQSRVNRNESRLFWDGPDAVPLGLVHFFYILPF 707
           SGRLLVGLRWWNYVDD+G S WVFE++ SRVN+NE R+FW G    P+    FF    F
Sbjct: 84  SGRLLVGLRWWNYVDDDGVSHWVFESKNSRVNKNEQRIFWLGLILCPVFWGLFFLFALF 142


>AY071297-1|AAL48919.1|  223|Drosophila melanogaster RE32705p
           protein.
          Length = 223

 Score =  116 bits (280), Expect = 2e-26
 Identities = 56/86 (65%), Positives = 65/86 (75%), Gaps = 9/86 (10%)
 Frame = +2

Query: 299 MNSATV---PLLDDDTIAFGEEDN------ANKQFVHPYIVFFHLVFRCSAIIVYILCGW 451
           M SATV   PLLDDDTI FGEED       A +++ HPY+ FFHL FR +AI++Y+ CGW
Sbjct: 1   MASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGW 60

Query: 452 FSDSFIASFVLVILLLSADFWTVKNI 529
           FSDSFI SFV V+L LSADFWTVKNI
Sbjct: 61  FSDSFITSFVFVVLFLSADFWTVKNI 86



 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 37/64 (57%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEAR-----QSRVNRNESRLFWDGPDAVPLGLVHFFY 695
           SGRLLVGLRWWNYVDD+G S WVFE++     QSRVN+NE R+FW G    P+    FF 
Sbjct: 87  SGRLLVGLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFL 146

Query: 696 ILPF 707
              F
Sbjct: 147 FALF 150


>AE014296-1550|AAF50344.2|  218|Drosophila melanogaster CG5021-PA,
           isoform A protein.
          Length = 218

 Score =  116 bits (280), Expect = 2e-26
 Identities = 56/86 (65%), Positives = 65/86 (75%), Gaps = 9/86 (10%)
 Frame = +2

Query: 299 MNSATV---PLLDDDTIAFGEEDN------ANKQFVHPYIVFFHLVFRCSAIIVYILCGW 451
           M SATV   PLLDDDTI FGEED       A +++ HPY+ FFHL FR +AI++Y+ CGW
Sbjct: 1   MASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGAAILIYMFCGW 60

Query: 452 FSDSFIASFVLVILLLSADFWTVKNI 529
           FSDSFI SFV V+L LSADFWTVKNI
Sbjct: 61  FSDSFITSFVFVVLFLSADFWTVKNI 86



 Score = 80.2 bits (189), Expect = 3e-15
 Identities = 36/59 (61%), Positives = 42/59 (71%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQSRVNRNESRLFWDGPDAVPLGLVHFFYILPF 707
           SGRLLVGLRWWNYVDD+G S WVFE++ SRVN+NE R+FW G    P+    FF    F
Sbjct: 87  SGRLLVGLRWWNYVDDDGVSHWVFESKNSRVNKNEQRIFWLGLILCPVFWGLFFLFALF 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,820,455
Number of Sequences: 53049
Number of extensions: 681981
Number of successful extensions: 1601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)