Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...    58   5e-09
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...    58   5e-09
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    29   2.5  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +2

Query: 368 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNI 529
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++++ LLS DFWTVKNI
Sbjct: 26  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNI 79



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQ--SRVNRNESRLFWDGPDAVPLGLVHFFYILP 704
           +GRLLVGLRWWN+VD +G + W FE+ +  +R    + R+FW G    P   + FF +  
Sbjct: 80  TGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWI-FFVVTA 138

Query: 705 F 707
           F
Sbjct: 139 F 139


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +2

Query: 368 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNI 529
           + F  P IV  HL F+ +A+  Y    +F++SFI  F++++ LLS DFWTVKNI
Sbjct: 68  QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNI 121



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = +3

Query: 531 SGRLLVGLRWWNYVDDNGKSPWVFEARQ--SRVNRNESRLFWDGPDAVPLGLVHFFYILP 704
           +GRLLVGLRWWN+VD +G + W FE+ +  +R    + R+FW G    P   + FF +  
Sbjct: 122 TGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWI-FFVVTA 180

Query: 705 F 707
           F
Sbjct: 181 F 181


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 528 FSGRLLVGLRWWNYVDDNGKSPWVFEARQSRVNRNESRLFWDGPDAVP 671
           F+G LL  L  W Y+DD   S  +      R+++N+S    D    +P
Sbjct: 192 FAGLLLFALWAWIYIDDPQDSKRISGKELGRIHKNKSAAHLDKNGDIP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,369
Number of Sequences: 27780
Number of extensions: 349279
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)