Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0584
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.11 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.30 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.6  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect(2) = 0.11
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 297 AGWFINNQYYLFHKLI 250
           +GW++N+ Y L +KLI
Sbjct: 206 SGWYLNHDYNLENKLI 221



 Score = 21.8 bits (44), Expect(2) = 0.11
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 276 QYYLFHKLILNEYQNRSIGTD 214
           +Y   HKL+LN Y    +  D
Sbjct: 258 EYLYSHKLLLNRYYLERLSND 278


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 701 QNIKKVDQTKGHSVRPIPEQAALVPVDPALTGLEH 597
           + IKK  + K  + RP+P ++ L+   P +T + H
Sbjct: 119 KKIKKTMENKDITKRPLPNESQLIKRHPIVTIMGH 153


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 385 LH-SVLPPGVPMLCDNC 432
           LH ++LPPGV   CD C
Sbjct: 361 LHGNLLPPGVCYTCDVC 377


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 285 INNQYYLF-HKLILNEYQNRSIGTD 214
           I  ++Y F HK +LN Y    +  D
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSND 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 285 INNQYYLF-HKLILNEYQNRSIGTD 214
           I  ++Y F HK +LN Y    +  D
Sbjct: 253 IRGEFYFFLHKQVLNRYYLERLSND 277


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 276 QYYLFHKLILNEYQNRSIGTD 214
           +Y   HKL+LN Y    +  D
Sbjct: 258 EYLYSHKLLLNRYYLERLSND 278


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 589 RPGCSRPVRAGSTGTRAACSGMG 657
           +P C+  +  G  G   AC G G
Sbjct: 593 KPHCAEEIGRGQYGIVFACDGWG 615


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 589 RPGCSRPVRAGSTGTRAACSGMG 657
           +P C+  +  G  G   AC G G
Sbjct: 631 KPHCAEEIGRGQYGIVFACDGWG 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,295
Number of Sequences: 438
Number of extensions: 4435
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)