Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0583
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 0.33
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 30 0.44
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.77
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 1.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.3
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.3
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 3.1
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 27 4.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.1
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.4
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.4
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 7.2
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 7.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 7.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.5
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.33
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 436 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 615
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 616 AAAVPEI---KTPEAADAPKLADNPVDEDK 696
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.9 bits (64), Expect = 0.44
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Frame = +1
Query: 391 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 567
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 568 PNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADIS 711
VKK P+ E E P+A AP V+E +P +S
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEPFYVS 546
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 388 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 558
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 1.0
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +1
Query: 463 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKT 642
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 643 PEAADAPKLADNPVD 687
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +1
Query: 475 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAA 654
T+ A+ E ++ S+ + SA A I N+ DL PN + + + +
Sbjct: 42 TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101
Query: 655 DAPKLADNPVDE 690
PK+ D D+
Sbjct: 102 HKPKIGDIAADD 113
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 443 KNQLLSLKIQKLKYKLPSLKFQKKKNL 523
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 3.1
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +1
Query: 469 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI-KTP 645
+K+E A +A EE S + A K + V SDA V + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 646 EAADAPKLADNPVDEDKPAD 705
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 496 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVESDAAAVPEIKTPEA 651
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +1
Query: 394 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 561
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 562 IIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDE 690
+ + V + ++ +V + P++ PK + D+
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 484 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAP 663
Q T+A PS +A S +P I+ N+ +A ++PE P A +
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420
Query: 664 KLADNPV--DEDKPAD 705
NP DE +P +
Sbjct: 421 VSVHNPTISDEAEPTE 436
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 327 VFWGYIVLFGLWYSGYLVVTNW 262
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 409 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 555
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Frame = +1
Query: 457 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID-------LAPNVESD 615
+PED++ V E+ A+ A +IP +KK + PN+E
Sbjct: 118 KPEDNQDPVIDIAHEVHYANVRLLAHAKTDAGEPVLIPVKLKKHSSTNLRSIIRPNIEGV 177
Query: 616 AAAVPEIKTPEAADAPKLADNPVDEDKP 699
+ P+ D PK + +D P
Sbjct: 178 QIHTIHLPRPKTEDKPKDPEGKLDTKNP 205
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 445 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 624
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 415 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 552
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 412 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 549
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 397 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 573
+E+P K +K ++P ++P + +T+V+ A ++E +P +D + +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276
Query: 574 MVKKIDLAPNVE 609
+V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.126 0.338
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,925
Number of Sequences: 5004
Number of extensions: 38094
Number of successful extensions: 117
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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