Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0580
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 77 4e-15
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.92
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 4.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 4.9
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 25 8.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 8.6
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 76.6 bits (180), Expect = 4e-15
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Frame = +1
Query: 112 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDSEAITKF 291
+S F +SL +R + + D + L +YGE LY NLI+ + G +++ +F
Sbjct: 35 YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKSLLEF 94
Query: 292 IDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVTDEGDHTRIVVSPKN 471
+ + RE+ + + E + V+DHFN+ EG I++
Sbjct: 95 VQSGGNLFVVAGSQLPEGIRELGRQLDMFLAERQSVVVDHFNH---AEGSDDIILLD--G 149
Query: 472 LIKAPTIVGEQN--TQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPK--SQVKEYPH 639
+ + P I+ ++ P+L++G G + N PIL + T+Y YN K ++V + P
Sbjct: 150 ISENPYIISDETRAAGPILYKGIGHYLG-PNPQTQPILRGNPTSYIYNTKTEAEVSKNPW 208
Query: 640 AVGRKTVLIAALQARNNARIVFS 708
A G + L++ LQ+ R+ S
Sbjct: 209 AAGTQLFLVSVLQSSTGERVGLS 231
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.92
Identities = 28/133 (21%), Positives = 57/133 (42%)
Frame = -3
Query: 554 SLSTISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSIS 375
S ++ S S++ S +I + + T+ + S S+ +S L S T + +S+
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP 172
Query: 374 NPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYF 195
+ + SL ++ A+ SS+N ++ +T SST +N+ S
Sbjct: 173 TSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSL 232
Query: 194 DRTRFASSASLKV 156
+ T A++ S +
Sbjct: 233 NSTTSATATSSSI 245
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.1
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Frame = -3
Query: 551 LSTISPVPSNSRGCVFCSPTIVGALIRF--LGDTTMRVWSPSSVTS*LKWSMTAADSSSI 378
LS+ S V S+S S T+ + + + T+ S SS S S TA+ SSS
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269
Query: 377 SNPHSEAISLYTSPAAALPAI------RRFPPSSMNLVMASLSTCPPNSSTEGANTM--R 222
S+ S + S +SP + I P S+ + + +S S+ SST +++M
Sbjct: 270 SSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS 329
Query: 221 FLYKYSPYFDRTRFASSAS 165
+ SP + +SS+S
Sbjct: 330 SSFSSSPTSSSSTISSSSS 348
Score = 26.2 bits (55), Expect = 4.9
Identities = 26/109 (23%), Positives = 51/109 (46%)
Frame = -3
Query: 554 SLSTISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSIS 375
S S+ S P+++ + S + + L ++M S SS S S ++ SSS S
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSM---SSSSSFSSSPTSSSSTISSSSS 348
Query: 374 NPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 228
+P S + S TS + + + SS + ++L++ +SS +++
Sbjct: 349 SPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = -2
Query: 699 NTSIVSCLQSCNQYCLTANCMGVLFHLTLRVVTVGSRI 586
++++V C+ + + C NC +++H+ G RI
Sbjct: 819 SSTVVDCVSAVREACSGVNCHDLIYHVFSFAAEFGQRI 856
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 326 LPAIRRFPPSSMNLVMASLSTCPPNSST 243
+P++ + PPSS+ A ST PP+ S+
Sbjct: 1498 IPSVAQQPPSSVAPATAPSSTLPPSQSS 1525
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.9
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = -3
Query: 584 ADRIGKTKLLSLSTISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS-*LKW 408
A + T+ +++T + V + + T G+ I G +T+ PS+VTS K
Sbjct: 199 ASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKN 258
Query: 407 SMTAADSSSISNPHSEAISL--YTSPAAALPAI 315
+ T +++ P A S+ YT+ +P I
Sbjct: 259 TATTTKTTTYVGPSPSASSVVAYTTKCIVVPVI 291
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 4.9
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 439 DHTRIVVSPKNLIKAPTIVGEQNTQPLLFEGTGLIVDKDNSLVLPILSADSTA---YSYN 609
DH ++V PK + K + Q PLL L + DN L +P S A + N
Sbjct: 872 DHALLIVKPKTINKRELLKVFQRPIPLLL--LQLFLVDDNGLRIPYSSKQQLAAVSKAAN 929
Query: 610 PKSQVKEYPHAV 645
K + YP ++
Sbjct: 930 GKPPSRFYPFSL 941
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.9
Identities = 24/107 (22%), Positives = 46/107 (42%)
Frame = -3
Query: 548 STISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNP 369
S++ P G + C + ++ S SSV+S SSS S+P
Sbjct: 92 SSLCTTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSS-------TTSSSSSSSP 144
Query: 368 HSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 228
S + + TSP+++ + SS + +S S+ +SS+ +++
Sbjct: 145 SSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 4.9
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Frame = -3
Query: 566 TKLLSLSTISPVPSNSRGCVFCSPTIVGALIRFLG-DTTMRVWSPSSVTS*LKWSMTAAD 390
T LL S+I S+S + PT+ + L TT VW T L T
Sbjct: 429 TSLLRRSSIDGSASSSSASL-AVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVT 487
Query: 389 SSSISNPHSEAISLYTSPAAAL-PAIRRFPPSSMNLVMASLSTCPPNSSTEGANTMRFLY 213
SSSI + +EA ++A+ + S + V AS ST +S++ ++T
Sbjct: 488 SSSIFSTATEATDTSVQTSSAIYDSSSTSNIQSSSSVYAS-STGALSSNSLSSSTSSVST 546
Query: 212 KYSPYFDRTRFASS 171
Y P + +ASS
Sbjct: 547 SYIPNASSSVYASS 560
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 352 EIASECGFEMDEESAAVIDHFNYDVTDEGDHTRIVVSPKNLIKAPTIVGEQ--NTQPLLF 525
E SE + + + ++ D + + PK I PT ++ + P +
Sbjct: 184 ENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKRRKRAVGSAPSVS 243
Query: 526 EGTGLIVDKDNSLVLPILSA 585
I+D DNS+++P LSA
Sbjct: 244 TDLNNILDDDNSILVPDLSA 263
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = -3
Query: 494 TIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAI 315
++ + + ++++ S + ++S S + S+ S SE S S ++A+P+
Sbjct: 462 SVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST 521
Query: 314 RRFPPSS------MNLVMASLSTCPPNSSTEGANTM 225
PSS M V++S S+ P +SS++ ++++
Sbjct: 522 SSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSI 557
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -3
Query: 392 DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGAN 231
+S+ IS P+SE + Y ++ +++ + ++TC P S E N
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLSICVPIVTTCIPYHSVENLN 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,795
Number of Sequences: 5004
Number of extensions: 61549
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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