Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0580
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...   193   1e-49
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917...    30   2.2  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    29   3.9  
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928...    28   6.8  
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025...    28   6.8  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    28   6.8  

>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score =  193 bits (470), Expect = 1e-49
 Identities = 100/214 (46%), Positives = 137/214 (64%), Gaps = 3/214 (1%)
 Frame = +1

Query: 76  LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEF 255
           LVL+D+L ++ +HS FF SLQ RG+ L F+LADD  L L +YG+YLY  L++FAPS   F
Sbjct: 36  LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPSTPRF 95

Query: 256 GGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVTD 432
           GG VD  +I +FID              D+ R IA+ECG + DE+  A VIDH NY  TD
Sbjct: 96  GGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAATD 155

Query: 433 -EGDHTRIVVSPKNLIKAPTIVGEQNTQ-PLLFEGTGLIVDKDNSLVLPILSADSTAYSY 606
            EGDHT  +++  +LI++  I+G +  + P+LF G G  V+  NSLVL +LSA  +AYS 
Sbjct: 156 AEGDHT--LIAGDDLIQSDVILGSKKIEAPVLFRGIGHAVNPSNSLVLKVLSASPSAYSA 213

Query: 607 NPKSQVKEYPHAVGRKTVLIAALQARNNARIVFS 708
           NPKS++   P   G    L++ +QARNNAR++ S
Sbjct: 214 NPKSKLASPPSLTGSAISLVSVMQARNNARVLIS 247


>03_02_0955 -
           12690405-12690842,12690940-12691130,12691208-12691718,
           12692240-12693171,12693260-12693351,12693430-12693509,
           12693568-12693621,12693734-12693850,12693949-12694194,
           12694273-12694432,12694512-12694576,12694686-12694877,
           12694980-12695061,12695153-12695925
          Length = 1310

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -3

Query: 371 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 252
           P +E++    S  P+AA P ++  PP  ++ V++SLS   PPN
Sbjct: 23  PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/94 (25%), Positives = 42/94 (44%)
 Frame = -3

Query: 416 LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEG 237
           L+ S T++ SS+ S+P + +         +L        SS + + AS ++  P ++   
Sbjct: 4   LRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASSSSSSSSSSLAASGNSASPAAAAAA 63

Query: 236 ANTMRFLYKYSPYFDRTRFASSASLKVKP*PRSC 135
           A+       YSP+ DR    S  S + +  P SC
Sbjct: 64  ASASFSPASYSPHSDRGGTKSPWSRRKRKRPLSC 97


>10_08_0003 -
           13992276-13992311,13992461-13992598,13992682-13992852,
           13992926-13992989,13993404-13993552,13993700-13993753,
           13993894-13994034,13994134-13994412,13994518-13994743,
           13995328-13995734
          Length = 554

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = +1

Query: 364 ECGFEMDEESAAVIDHFNYDVTDE----GDHT-RIVVSPKNLIK----APTIVGEQNTQP 516
           E G +MD+  A V+D F+    D     GD T R+ ++P  L++    A TI G + T+P
Sbjct: 357 EVGVKMDKHGAIVVDEFSRTSVDSIWAVGDVTNRVNLTPVALMEGGALARTIFGNEPTKP 416


>09_04_0286 +
           16400695-16401369,16401473-16401658,16402115-16402575,
           16402678-16402836,16402914-16403265,16403360-16403653
          Length = 708

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -3

Query: 359 AISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSS 246
           AISLYTSP         F PSS        ST PP++S
Sbjct: 5   AISLYTSPPPGAVYSSEFDPSSRG-SSPPCSTAPPSTS 41


>01_06_0919 - 32993752-32993856,32994383-32994592,32994666-32995220,
            32995705-32995926,32996381-32996511,32997456-32998353,
            32998453-32998530,32998612-32998683,32998728-32998763,
            32999413-33000353,33000531-33000659,33000751-33000894,
            33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 738  ASSEKKNTDPTENNTSIVSCLQSCNQYCLTAN 643
            +S E     P E   S++ CLQSC+  C   N
Sbjct: 943  SSLEMAKKLPVERQQSLLVCLQSCSAICALCN 974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,701
Number of Sequences: 37544
Number of extensions: 401291
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)