Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0580
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                  181   5e-46
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)             29   5.2  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   5.2  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score =  181 bits (441), Expect = 5e-46
 Identities = 86/159 (54%), Positives = 106/159 (66%)
 Frame = +1

Query: 61  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 240
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 241 SVLEFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNY 420
           SV EFGG ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++
Sbjct: 86  SVEEFGGSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISH 145

Query: 421 DVTDEGDHTRIVVSPKNLIKAPTIVGEQNTQPLLFEGTG 537
           DV+D   HT +V  P N+IKA T+ G+  T PLLF+G G
Sbjct: 146 DVSDLDQHTLVVAEPSNVIKADTVTGKTVTSPLLFKGVG 184


>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = -3

Query: 407 SMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 228
           S +++ SSS S+  SE     T   A  PA  R  P+S+N       T P   +   A+T
Sbjct: 130 SSSSSSSSSSSSSSSEETDNETEQPAT-PAPSRQKPTSLNGASLGYDT-PAFQAGAQAST 187

Query: 227 MRFLYKYSPY-FDRTRFASSASLKVKP----*PRSCNDLKNCECVSLIFKLS 87
               +K  PY  D   F + A+L + P     P +  D  + +  +LI +LS
Sbjct: 188 DTLDFKMDPYMMDPVPFLNPANLSLNPDNLDTPLNSMDFSDTDSQALIKELS 239


>SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)
          Length = 294

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 121 FFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDS 273
           FF +L ERG+  +F +++      +K   YL+ +   F+    EFG ++ S
Sbjct: 11  FFNALFERGFRPSFTVSNANACKRTKSSIYLHLHAFTFSGFTFEFGARLYS 61


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 TAADSSSISNPHSEAISLYTSPAAALP 321
           TA   S+I++PH+  +S  T+PAA  P
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSP 502


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,354,302
Number of Sequences: 59808
Number of extensions: 465051
Number of successful extensions: 1134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)