BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0580 (742 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 188 4e-48 U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 34 0.12 AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 32 0.49 Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical pr... 31 0.86 AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein. 31 0.86 Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical p... 30 1.5 Z71262-9|CAA95817.2| 440|Caenorhabditis elegans Hypothetical pr... 30 1.5 AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. 30 1.5 AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. 30 1.5 AY037797-1|AAK94762.1| 412|Caenorhabditis elegans GLY-18 protein. 30 1.5 AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 30 1.5 U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 29 3.5 AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 29 3.5 AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell... 29 4.6 Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 6.0 Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 6.0 >Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical protein T09A5.11 protein. Length = 445 Score = 188 bits (458), Expect = 4e-48 Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 2/213 (0%) Frame = +1 Query: 76 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEF 255 LVL + +K+THS F S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP V F Sbjct: 24 LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGVQVF 83 Query: 256 GGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT-D 432 GG + I+KF+D D REIA+E GFE +E +VIDH NYD T D Sbjct: 84 GGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTLD 143 Query: 433 EGDHTRIVVSPKNLIKAPTIVGEQ-NTQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYN 609 GDHT +VV LI A IVG P+LF+G GL+ K N+L L I+ A TAYSY+ Sbjct: 144 SGDHTTLVVGKDQLISAELIVGNSAKLHPVLFKGIGLVAGKTNNLALSIVRASGTAYSYD 203 Query: 610 PKSQVKEYPHAVGRKTVLIAALQARNNARIVFS 708 PK+ P G +T+L+ LQ+RNNARIVF+ Sbjct: 204 PKAVRATNPSIAGSRTLLVGGLQSRNNARIVFT 236 >U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein F40H6.5 protein. Length = 1288 Score = 33.9 bits (74), Expect = 0.12 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 437 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 261 PS S SMT S S ++ S +S +PA + P I + PSS N S++T Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545 Query: 260 PPNSSTEGANT 228 P ++S++ +T Sbjct: 546 PDSASSQKIST 556 >AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical protein Y51B11A.1 protein. Length = 1079 Score = 31.9 bits (69), Expect = 0.49 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS TS ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 181 PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 240 Query: 263 CPPNSSTEGANT 228 P +STE ++ Sbjct: 241 APETTSTESPSS 252 Score = 31.9 bits (69), Expect = 0.49 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = -3 Query: 440 SPSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLS 267 SPSS T+ ++ + T A +++S P S + T+ A PPSS V + + Sbjct: 525 SPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 584 Query: 266 TCPPNSSTE 240 T P +STE Sbjct: 585 TAPETTSTE 593 Score = 31.5 bits (68), Expect = 0.65 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S +P S + T+ A PPSS V + +T Sbjct: 227 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 286 Query: 263 CPPNSSTE 240 P +STE Sbjct: 287 APETTSTE 294 Score = 31.5 bits (68), Expect = 0.65 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S +P S + T+ A PPSS V + +T Sbjct: 503 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 562 Query: 263 CPPNSSTE 240 P +STE Sbjct: 563 APETTSTE 570 Score = 31.1 bits (67), Expect = 0.86 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS TS ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 135 PSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 194 Query: 263 CPPNSSTE 240 P +STE Sbjct: 195 APETTSTE 202 Score = 31.1 bits (67), Expect = 0.86 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS TS ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 710 PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 769 Query: 263 CPPNSSTE 240 P +STE Sbjct: 770 APETTSTE 777 Score = 31.1 bits (67), Expect = 0.86 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS TS ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 848 PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 907 Query: 263 CPPNSSTE 240 P +STE Sbjct: 908 APETTSTE 915 Score = 30.7 bits (66), Expect = 1.1 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%) Frame = -3 Query: 566 TKLLSLSTISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADS 387 T + +TI+ + S S T V +TT SS T + TA ++ Sbjct: 415 TTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 474 Query: 386 SSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLSTCPPNSSTEGANT 228 +S P S + T+ A PPSS V + +T P +STE ++ Sbjct: 475 TSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSS 528 Score = 30.7 bits (66), Expect = 1.1 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWS-MTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS TS ++ + +TA +++S P S + T+ A PPSS V + +T Sbjct: 802 PSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 861 Query: 263 CPPNSSTE 240 P +STE Sbjct: 862 APETTSTE 869 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 89 PSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 148 Query: 263 CPPNSSTEGANT 228 P +STE ++ Sbjct: 149 APETTSTEAPSS 160 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 549 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 608 Query: 263 CPPNSSTE 240 P +STE Sbjct: 609 APETTSTE 616 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 572 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 631 Query: 263 CPPNSSTE 240 P +STE Sbjct: 632 APETTSTE 639 Score = 30.3 bits (65), Expect = 1.5 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 595 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 654 Query: 263 CPPNSSTE 240 P +STE Sbjct: 655 APETTSTE 662 Score = 29.9 bits (64), Expect = 2.0 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 273 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 332 Query: 263 CPPNSSTE 240 P +STE Sbjct: 333 APETTSTE 340 Score = 29.1 bits (62), Expect = 3.5 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264 PSS T+ ++ + T A +++S P S + T+ A PPSS V + +T Sbjct: 664 PSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 723 Query: 263 CPPNSSTE 240 P +STE Sbjct: 724 APETTSTE 731 Score = 27.9 bits (59), Expect = 8.0 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Frame = -3 Query: 461 DTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL- 285 +TT SS T ++TA +++S P S + T+ A PSS Sbjct: 473 ETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTP 532 Query: 284 VMASLSTCPPNSSTE 240 V + +T P +STE Sbjct: 533 VQTTTTTAPETTSTE 547 >Z83125-1|CAB05620.2| 420|Caenorhabditis elegans Hypothetical protein T15D6.2 protein. Length = 420 Score = 31.1 bits (67), Expect = 0.86 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -2 Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 S+ I+ VYDC +FL HLKS + + Y+SG Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193 >AY037795-1|AAK94760.1| 420|Caenorhabditis elegans GLY-16 protein. Length = 420 Score = 31.1 bits (67), Expect = 0.86 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -2 Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 S+ I+ VYDC +FL HLKS + + Y+SG Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193 >Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical protein F22D6.12 protein. Length = 436 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 +S SH I++ VYDC FL HL++ + + Y+SG Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210 >Z71262-9|CAA95817.2| 440|Caenorhabditis elegans Hypothetical protein F22D6.11 protein. Length = 440 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 SH I+ YDC FL HLKS + + Y+SG Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213 >AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. Length = 436 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 +S SH I++ VYDC FL HL++ + + Y+SG Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210 >AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. Length = 352 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = -2 Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 +S SH I++ VYDC FL HL++ + + Y+SG Sbjct: 93 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126 >AY037797-1|AAK94762.1| 412|Caenorhabditis elegans GLY-18 protein. Length = 412 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334 SH I+ YDC FL HLKS + + Y+SG Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185 >AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical protein H02F09.3 protein. Length = 1275 Score = 30.3 bits (65), Expect = 1.5 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = -3 Query: 401 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 228 T SS + S A + T+ + + P S +L M+SLST P+SST GA + Sbjct: 424 TTGGSSPSTAGTSLASTAVTTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATS 481 >U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein 1 protein. Length = 442 Score = 29.1 bits (62), Expect = 3.5 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 126 QIITRTRLWLNFQTCG*CKSCPVKIRRIFIQESHSIRTFRARV 254 + + R RL + C K+CPV+ + + HS +T RA + Sbjct: 341 ETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALI 383 >AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. Length = 442 Score = 29.1 bits (62), Expect = 3.5 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 126 QIITRTRLWLNFQTCG*CKSCPVKIRRIFIQESHSIRTFRARV 254 + + R RL + C K+CPV+ + + HS +T RA + Sbjct: 341 ETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALI 383 >AC024201-2|AAK82924.1| 556|Caenorhabditis elegans Abnormal cell lineage protein 17,isoform b protein. Length = 556 Score = 28.7 bits (61), Expect = 4.6 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 150 WLNFQTCG*CKSCPVKIR 203 W NF CG C S PVK++ Sbjct: 502 WKNFIFCGMCSSAPVKVK 519 >Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein T12D8.1 protein. Length = 2561 Score = 28.3 bits (60), Expect = 6.0 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Frame = -3 Query: 488 VGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAI-SLYTSPAAALPAIR 312 +G+ T+ S SS L+ A +S ++ + + S YT AAA Sbjct: 2324 IGSASGLSSQATIIASSSSSANESLQSRQAATSVTSANSGRTRGVRSYYTEEAAARARAF 2383 Query: 311 RFPPSSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFA 177 PP +L + +T ++ MR +K Y R+R A Sbjct: 2384 GIPPEMASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRIA 2428 >Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein T12D8.1 protein. Length = 2561 Score = 28.3 bits (60), Expect = 6.0 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Frame = -3 Query: 488 VGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAI-SLYTSPAAALPAIR 312 +G+ T+ S SS L+ A +S ++ + + S YT AAA Sbjct: 2324 IGSASGLSSQATIIASSSSSANESLQSRQAATSVTSANSGRTRGVRSYYTEEAAARARAF 2383 Query: 311 RFPPSSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFA 177 PP +L + +T ++ MR +K Y R+R A Sbjct: 2384 GIPPEMASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRIA 2428 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.317 0.135 0.379 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,575,460 Number of Sequences: 27780 Number of extensions: 347719 Number of successful extensions: 1092 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1083 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1745954468 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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