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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0580
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...   188   4e-48
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    32   0.49 
Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     31   0.86 
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     30   1.5  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     30   1.5  
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     30   1.5  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    30   1.5  
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    29   3.5  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      29   3.5  
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    29   4.6  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score =  188 bits (458), Expect = 4e-48
 Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 2/213 (0%)
 Frame = +1

Query: 76  LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEF 255
           LVL +   +K+THS F  S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP V  F
Sbjct: 24  LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAPGVQVF 83

Query: 256 GGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT-D 432
           GG +    I+KF+D              D  REIA+E GFE +E   +VIDH NYD T D
Sbjct: 84  GGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTLD 143

Query: 433 EGDHTRIVVSPKNLIKAPTIVGEQ-NTQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYN 609
            GDHT +VV    LI A  IVG      P+LF+G GL+  K N+L L I+ A  TAYSY+
Sbjct: 144 SGDHTTLVVGKDQLISAELIVGNSAKLHPVLFKGIGLVAGKTNNLALSIVRASGTAYSYD 203

Query: 610 PKSQVKEYPHAVGRKTVLIAALQARNNARIVFS 708
           PK+     P   G +T+L+  LQ+RNNARIVF+
Sbjct: 204 PKAVRATNPSIAGSRTLLVGGLQSRNNARIVFT 236


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 261
           PS   S    SMT   S S ++  S  +S   +PA + P I  +  PSS N    S++T 
Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545

Query: 260 PPNSSTEGANT 228
           P ++S++  +T
Sbjct: 546 PDSASSQKIST 556


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS TS ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 181 PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 240

Query: 263 CPPNSSTEGANT 228
            P  +STE  ++
Sbjct: 241 APETTSTESPSS 252



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 440 SPSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLS 267
           SPSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +
Sbjct: 525 SPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTT 584

Query: 266 TCPPNSSTE 240
           T P  +STE
Sbjct: 585 TAPETTSTE 593



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S  +P S    + T+   A       PPSS    V  + +T
Sbjct: 227 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 286

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 287 APETTSTE 294



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S  +P S    + T+   A       PPSS    V  + +T
Sbjct: 503 PSSSTTPVQTTTTTAPETTSTESPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 562

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 563 APETTSTE 570



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS TS ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 135 PSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 194

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 195 APETTSTE 202



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS TS ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 710 PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 769

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 770 APETTSTE 777



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437  PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
            PSS TS ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 848  PSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 907

Query: 263  CPPNSSTE 240
             P  +STE
Sbjct: 908  APETTSTE 915



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
 Frame = -3

Query: 566 TKLLSLSTISPVPSNSRGCVFCSPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADS 387
           T  +  +TI+   + S      S T V        +TT      SS T     + TA ++
Sbjct: 415 TTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPET 474

Query: 386 SSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLSTCPPNSSTEGANT 228
           +S   P S    + T+   A       PPSS    V  + +T P  +STE  ++
Sbjct: 475 TSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSS 528



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437  PSSVTS*LKWS-MTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
            PSS TS ++ + +TA +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 802  PSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 861

Query: 263  CPPNSSTE 240
             P  +STE
Sbjct: 862  APETTSTE 869



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 89  PSSSTTPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 148

Query: 263 CPPNSSTEGANT 228
            P  +STE  ++
Sbjct: 149 APETTSTEAPSS 160



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 549 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 608

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 609 APETTSTE 616



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 572 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 631

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 632 APETTSTE 639



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 595 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTT 654

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 655 APETTSTE 662



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 273 PSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 332

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 333 APETTSTE 340



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 437 PSSVTS*LKWSMTAA-DSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL-VMASLST 264
           PSS T+ ++ + T A +++S   P S    + T+   A       PPSS    V  + +T
Sbjct: 664 PSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTT 723

Query: 263 CPPNSSTE 240
            P  +STE
Sbjct: 724 APETTSTE 731



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 461 DTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNL- 285
           +TT      SS T     ++TA +++S   P S    + T+   A        PSS    
Sbjct: 473 ETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTTP 532

Query: 284 VMASLSTCPPNSSTE 240
           V  + +T P  +STE
Sbjct: 533 VQTTTTTAPETTSTE 547


>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 441 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 93  ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 334
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -3

Query: 401 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 228
           T   SS  +   S A +  T+  +   +    P  S +L M+SLST  P+SST GA +
Sbjct: 424 TTGGSSPSTAGTSLASTAVTTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATS 481


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 126 QIITRTRLWLNFQTCG*CKSCPVKIRRIFIQESHSIRTFRARV 254
           + + R RL   +  C   K+CPV+   +  +  HS +T RA +
Sbjct: 341 ETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALI 383


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 126 QIITRTRLWLNFQTCG*CKSCPVKIRRIFIQESHSIRTFRARV 254
           + + R RL   +  C   K+CPV+   +  +  HS +T RA +
Sbjct: 341 ETVFRKRLSARYSMCVAAKACPVRSNSLSCKHRHSNKTGRALI 383


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 150 WLNFQTCG*CKSCPVKIR 203
           W NF  CG C S PVK++
Sbjct: 502 WKNFIFCGMCSSAPVKVK 519


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = -3

Query: 488  VGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAI-SLYTSPAAALPAIR 312
            +G+        T+   S SS    L+    A   +S ++  +  + S YT  AAA     
Sbjct: 2324 IGSASGLSSQATIIASSSSSANESLQSRQAATSVTSANSGRTRGVRSYYTEEAAARARAF 2383

Query: 311  RFPPSSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFA 177
              PP   +L +   +T    ++      MR  +K   Y  R+R A
Sbjct: 2384 GIPPEMASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRIA 2428


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = -3

Query: 488  VGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAI-SLYTSPAAALPAIR 312
            +G+        T+   S SS    L+    A   +S ++  +  + S YT  AAA     
Sbjct: 2324 IGSASGLSSQATIIASSSSSANESLQSRQAATSVTSANSGRTRGVRSYYTEEAAARARAF 2383

Query: 311  RFPPSSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFA 177
              PP   +L +   +T    ++      MR  +K   Y  R+R A
Sbjct: 2384 GIPPEMASLSLRMETTQNAQTAFSAYQKMRREWKDRVYLARSRIA 2428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,460
Number of Sequences: 27780
Number of extensions: 347719
Number of successful extensions: 1092
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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