Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0580
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    24   1.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    24   1.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    24   1.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  IT*ISKKRIHNSSNHYK 139
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  IT*ISKKRIHNSSNHYK 139
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  IT*ISKKRIHNSSNHYK 139
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  IT*ISKKRIHNSSNHYK 139
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 89  IT*ISKKRIHNSSNHYK 139
           I+ +S K IHN++N+YK
Sbjct: 315 ISSLSNKTIHNNNNNYK 331


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 284 VMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFASSASLKVK 153
           VM++ STC  +    G+ +   +YK +    + R  SSA  + K
Sbjct: 573 VMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERK 616


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 696 YCFQWDRYSSSL 731
           YC +W+ Y S++
Sbjct: 11  YCLRWNNYQSNM 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,567
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)