Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0580
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...   192   2e-49
At5g48150.2 68418.m05948 phytochrome A signal transduction 1 (PA...    31   0.80 
At5g48150.1 68418.m05947 phytochrome A signal transduction 1 (PA...    31   0.80 
At3g58770.1 68416.m06550 expressed protein  ; expression support...    31   1.1  
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   5.7  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   9.9  
At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    27   9.9  
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    27   9.9  

>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score =  192 bits (468), Expect = 2e-49
 Identities = 95/218 (43%), Positives = 142/218 (65%), Gaps = 3/218 (1%)
 Frame = +1

Query: 64  DHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 243
           D   LVL+D+L++K +HS FF +L+ RG+ L FKLA+D+ L L +YG+YLY  LI+FAPS
Sbjct: 30  DRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPS 89

Query: 244 VLEFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAA-VIDHFNY 420
              FGG +DS++I  F+D              D+ R IA+ECG + DE+S+A VIDH ++
Sbjct: 90  TERFGGSLDSKSIADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSF 149

Query: 421 DVTD-EGDHTRIVVSPKNLIKAPTIVGEQNTQ-PLLFEGTGLIVDKDNSLVLPILSADST 594
            V+D +GDHT  +++  +L+K+  I+G+   + P+LF G    ++  N+LVL +LSA  +
Sbjct: 150 SVSDVDGDHT--LIAADDLVKSDVILGKTKIEAPVLFRGVAHSLNPTNNLVLKVLSASPS 207

Query: 595 AYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFS 708
           AYS NP S++   P   G    L++ +QARNNAR+V S
Sbjct: 208 AYSANPSSKLSSPPQLTGSSISLVSVMQARNNARVVIS 245


>At5g48150.2 68418.m05948 phytochrome A signal transduction 1 (PAT1)
          Length = 490

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 299 SSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYF 195
           SS + +  +L+ CP  +STE  + M  LY+  PYF
Sbjct: 173 SSGSSIYKALNRCPEPASTELLSYMHILYEVCPYF 207


>At5g48150.1 68418.m05947 phytochrome A signal transduction 1 (PAT1)
          Length = 490

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 299 SSMNLVMASLSTCPPNSSTEGANTMRFLYKYSPYF 195
           SS + +  +L+ CP  +STE  + M  LY+  PYF
Sbjct: 173 SSGSSIYKALNRCPEPASTELLSYMHILYEVCPYF 207


>At3g58770.1 68416.m06550 expressed protein  ; expression supported
           by MPSS
          Length = 771

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -3

Query: 398 AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANTMRF 219
           A+ S + + P SE  S   +P  +L +   FP S  NL        PPNS T     + F
Sbjct: 601 ASQSRAYAVPDSEFPSTILNPCCSLAS---FPLSEKNLNFHGSGLGPPNSFTLSQQQLPF 657

Query: 218 LYKYS 204
            Y Y+
Sbjct: 658 PYDYN 662


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 429 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHK 313
           S I V  +  CCRFL+  +S+    FS   SG+ + S K
Sbjct: 5   SCICVSAMKPCCRFLISFRSSSLFGFSPPNSGKFINSSK 43


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -3

Query: 494 TIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAI 315
           T+ G+ +    +TT    SPS+V +      T+  +  + +P S+  S   SP+ +LPA 
Sbjct: 572 TVTGSSLS--SNTTESSDSPSTVVT----PSTSPPAGHLGSP-SDTPSSVVSPSTSLPAG 624

Query: 314 RRFPPSSMNLVMASLSTCPP 255
           +   P +   ++ S ST PP
Sbjct: 625 QLGAPPATPSMVVSPSTSPP 644


>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 493 VGEQNTQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKS-QVKEYPHAVG 648
           V + +  P +F+ T   + K NS+   +  A  T Y ++PKS  + E P+  G
Sbjct: 603 VVQSSVLPDMFKATYEAITKGNSMWNQLSVASGTLYEWDPKSTYIHEPPYFKG 655


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 413 KWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLST 264
           K  +   D+ SIS P+S+ +S    PA  +  I  + P     ++  L T
Sbjct: 382 KMLLEVEDNQSISTPYSQLVSEVILPAVRVSGINTWEPRDPEPMLRLLET 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,277
Number of Sequences: 28952
Number of extensions: 326627
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)