Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0578
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5BIR1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q2THV7 Cluster: Membrane-associated DHHC8 zinc finger p...    35   2.8  
UniRef50_Q7VIC5 Cluster: Cation-transporting ATPase; n=1; Helico...    34   3.7  
UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1; ...    34   4.9  
UniRef50_Q6E0U4 Cluster: Dermokine; n=20; Eutheria|Rep: Dermokin...    33   6.5  

>UniRef50_A5BIR1 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1404

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 25  RPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRL--WQPSPSPSVLSYPNS 186
           +P  +S SP LQ + T   SS S  + P   P    T    +QP P P  +SY  S
Sbjct: 28  QPSPSSPSPNLQPYATPSPSSSSSSYPPPTGPLPFHTHYLPYQPQPQPLPISYQTS 83


>UniRef50_Q2THV7 Cluster: Membrane-associated DHHC8 zinc finger
           protein; n=2; Euteleostomi|Rep: Membrane-associated
           DHHC8 zinc finger protein - Fugu rubripes (Japanese
           pufferfish) (Takifugu rubripes)
          Length = 797

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 28  PLXTSGSP-GLQEFGTRQQSSQSQP-HLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYT 201
           PL     P G +    +Q   + +  HLPA+ P    +  ++   SP+ LS  N ++SY 
Sbjct: 451 PLQLDSDPVGSRSLSLKQGHRRPEKGHLPALQPPTVTSTPYKSVFSPNTLSNRNGSLSYD 510

Query: 202 SLILLDVSEAT 234
           SL+   +S AT
Sbjct: 511 SLLHPSISSAT 521


>UniRef50_Q7VIC5 Cluster: Cation-transporting ATPase; n=1;
           Helicobacter hepaticus|Rep: Cation-transporting ATPase -
           Helicobacter hepaticus
          Length = 747

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 25/62 (40%), Positives = 35/62 (56%)
 Frame = +3

Query: 402 LSTKVKMLILRILPI*KFIGAVNSWSEAVCSISTIQTLNFTNVLVLSTFWYVFH*SAIFH 581
           LST+ K+++  I  I   I  V SWSE    IS   TL++T +LVLS    V H   +F+
Sbjct: 99  LSTQTKLIVSIIATI---IVVVLSWSEMFIGISLPYTLHYTLLLVLSL--AVMHMGRMFY 153

Query: 582 LQ 587
           L+
Sbjct: 154 LR 155


>UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 1911

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 79   QSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSL 207
            Q S S P++  +H   Q + L Q SP+ S  SYPN +I+ T+L
Sbjct: 1702 QRSSSSPYVQTLHK--QSSLLSQHSPTASTFSYPNPSIAGTAL 1742


>UniRef50_Q6E0U4 Cluster: Dermokine; n=20; Eutheria|Rep: Dermokine -
           Homo sapiens (Human)
          Length = 476

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 7   GXSPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPS 165
           G +P+  P    G+ G   FGT  Q + +QP   +V  ++Q      P PS S
Sbjct: 185 GMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASNQNEGCTNPPPSGS 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,193,434
Number of Sequences: 1657284
Number of extensions: 15889649
Number of successful extensions: 38912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38842
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)