Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0578
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    30   0.45 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   1.0  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   4.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   7.4  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 70  TRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 180
           T     QS    P + P    T  + PSPSP+  SYP
Sbjct: 301 TSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYP 337


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 40  SGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSP--SPSVLSYPNSTISYTSL 207
           S +P      +  QSSQ   HL    P++++  L  PSP   PS  S  N    Y  L
Sbjct: 129 SQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYL 186


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = +1

Query: 58  QEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATV 237
           ++ G R+ S  S    P    A  +  +W    +  +   P  TI++   +++  +  T+
Sbjct: 14  KQLGHREVSEGSTQPKPDPSGATMKACVWDGPLNVKIAEVPKPTITHPKDVIVKTTACTI 73

Query: 238 CA 243
           C+
Sbjct: 74  CS 75


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 13   SPRWRPLXTSGSP-GLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSP 162
            SPR  P+  SGSP  +   G    +  + P  P+ H  +   ++  P+PSP
Sbjct: 1589 SPRMGPVNNSGSPLAMNAAGQPSLAVPAVPSAPSNH-FNPFAKMQPPAPSP 1638


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 121 ADQRTRLWQPSPSPSVLSYPNSTISYTS 204
           A Q +RL  P P PS  S P  TIS  S
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,085
Number of Sequences: 5004
Number of extensions: 66308
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)