Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0578
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   0.83 
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634...    29   3.3  
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    29   4.4  
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222...    29   5.8  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   7.7  
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612           28   7.7  
02_05_0584 - 30135768-30135790,30136104-30136866                       28   7.7  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 22/63 (34%), Positives = 26/63 (41%)
 Frame = +1

Query: 13   SPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
            SP + P   S SP    +     SS   P  PA  P         PS SPS  SY  S++
Sbjct: 1756 SPSYSPTSPSYSPTSPSYSPT--SSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSV 1813

Query: 193  SYT 201
             YT
Sbjct: 1814 KYT 1816


>05_07_0323 +
           29260608-29260836,29262242-29262513,29263349-29263487,
           29263581-29263714,29263847-29263970,29264364-29264773
          Length = 435

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +1

Query: 4   TGXSPRWRPLXTSGSPGLQEFGTRQQS--------SQSQPHLPAVHPADQRTRLWQPSPS 159
           T  +PR RPL +     L+   T Q++        SQSQP  P+ +P+  R+ +   + S
Sbjct: 349 TRQNPRDRPLMSEVVHTLETLHTDQRANATTSYSYSQSQPPSPSANPSPSRSPMRSSASS 408

Query: 160 PSVLSYP 180
           P    YP
Sbjct: 409 PYGAPYP 415


>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 64  FGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSL 207
           F   + SSQ  P  PA HP+ Q T L +   +P   S  +  I  ++L
Sbjct: 242 FFDSEASSQEMPTSPATHPSTQHTALTKRHSTPPASSDVDRPIGGSAL 289


>02_05_1293 -
           35520733-35520963,35521696-35521878,35522040-35522255,
           35522936-35523022,35523125-35523331,35523426-35523650,
           35523743-35523798,35524009-35524115,35524443-35525470
          Length = 779

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 739 ELIIFSTTPMVCQLVYVLI-DLDLNAR 816
           ++I+F TT MV + +Y+++ DL LN R
Sbjct: 570 KVIVFCTTAMVTEFMYIMLRDLKLNVR 596


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 127 QRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE*YSI 258
           +R R+  PSPSPS    P+ + S T+      S  T  +  YSI
Sbjct: 522 ERKRVRAPSPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSI 565


>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
          Length = 648

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 137 LVRWSAGCTAGR*GWLWLDCCLVPNSCSP 51
           L+R S  CT      LW+ C + P  C+P
Sbjct: 377 LMRVSEACTRRALSMLWVVCRMAPEECAP 405


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 87  PKPTSPARGAPCRPTNEALATFPFPFCSLLP 179
           P P SPA GAP  P++ + + FPFP  S LP
Sbjct: 104 PAPGSPAAGAP--PSSGS-SGFPFPMPSPLP 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,759,999
Number of Sequences: 37544
Number of extensions: 453110
Number of successful extensions: 1229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)