Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0578
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2526| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_43731| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_50510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_30140| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39086| Best HMM Match : Herpes_capsid (HMM E-Value=2.7) 29 4.5
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37089| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.9) 29 6.0
SB_26464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 6.0
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_35822| Best HMM Match : DUF765 (HMM E-Value=3.3) 29 6.0
SB_35408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_31357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_9035| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4) 28 7.9
SB_8047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_47580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_44775| Best HMM Match : DUF143 (HMM E-Value=7.3e-20) 28 7.9
SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097) 28 7.9
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 28 7.9
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_2526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 92 LWLDCCLVPNSCSPGXPLV 36
L+LD C NSCSPG PLV
Sbjct: 38 LYLDICHTSNSCSPGDPLV 56
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 31.5 bits (68), Expect = 0.84
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 28 PLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTS 204
P + P ++ GT + ++P +P P P+PSPS L P +S+++
Sbjct: 3155 PTVLTTLPSSRQAGTSSTAKATRPSVPPEEPVYTGQFSVNPTPSPSTLVTPGEALSWSA 3213
>SB_43731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -3
Query: 80 CCLVPNSCSPGXPLV 36
C LV NSCSPG PLV
Sbjct: 3 CMLVSNSCSPGDPLV 17
>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 77 CLVPNSCSPGXPLV 36
CL+ NSCSPG PLV
Sbjct: 69 CLISNSCSPGDPLV 82
>SB_50510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLI 210
TSGSPGLQEF S P L V+ Q Q + SP VL ST++ LI
Sbjct: 14 TSGSPGLQEF-----DSTVDP-LQPVNSTKQTVTPTQAALSPDVLEQIISTVTGIKLI 65
>SB_13723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQQSSQSQ 96
TSGSPGLQEF T+ Q S+
Sbjct: 14 TSGSPGLQEFDTKNQPFASK 33
>SB_30140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 95 WLWLDCCLVPNSCSPGXPLV 36
W+ L C + NSCSPG PLV
Sbjct: 2 WMRLWCYELSNSCSPGDPLV 21
>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 66 EFLQPGGXTSXERPPPR 16
EFLQPG ERPPPR
Sbjct: 33 EFLQPGDPLVLERPPPR 49
>SB_39086| Best HMM Match : Herpes_capsid (HMM E-Value=2.7)
Length = 166
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLIL 213
TSGSPGLQEF P LP+V P T S V S+ I T +L
Sbjct: 14 TSGSPGLQEF-----DGAIYPSLPSVCPQTHMTPTAPASIGGDVQSFRLQKICDTQAVL 67
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 38 LVXPPGCRNSARGNNLA 88
LV PPGCRNS GN ++
Sbjct: 32 LVDPPGCRNSIDGNGVS 48
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 38 LVXPPGCRNSARG-NNLAKANLTCPR 112
LV PPGCRNS G N + + +T R
Sbjct: 91 LVDPPGCRNSIAGKNTVTQVGITLSR 116
>SB_37089| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.9)
Length = 141
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQQSSQSQPHLPA 111
TSGSPGLQEF + +P +PA
Sbjct: 70 TSGSPGLQEFDNTRLLRVGKPVVPA 94
>SB_26464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 83 DCCLVPNSCSPGXPLV 36
DC NSCSPG PLV
Sbjct: 34 DCFYTSNSCSPGDPLV 49
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 13 SPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
SP P S SP + SS P P+ P PS SP+ SY ++
Sbjct: 423 SPSMSPASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 482
Query: 193 SYT 201
SY+
Sbjct: 483 SYS 485
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +1
Query: 13 SPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
SP + P SP G S P P+ P PS SP+ SY ++
Sbjct: 430 SPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 489
Query: 193 SYT 201
SY+
Sbjct: 490 SYS 492
>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.7 bits (61), Expect = 6.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 395 ISPEHESENVNIKNFAHMKIHWS 463
I+PE+E+++V I+ +H++ +WS
Sbjct: 150 INPEYENDSVKIRRKSHLEDYWS 172
>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +2
Query: 38 LVXPPGCRNSARG--NNLAKANL 100
LV PPGCRNS G NL A L
Sbjct: 15 LVDPPGCRNSIEGCNRNLTSAGL 37
>SB_35822| Best HMM Match : DUF765 (HMM E-Value=3.3)
Length = 138
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -3
Query: 80 CCLVPNSCSPGXPLV 36
C V NSCSPG PLV
Sbjct: 11 CSFVSNSCSPGDPLV 25
>SB_35408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQQSSQSQPHLP 108
TSGSPGLQEF + P +P
Sbjct: 14 TSGSPGLQEFDPSDPTMPDDPTMP 37
>SB_31357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 92 LWLDCCLVPNSCSPGXPLV 36
LW L+ NSCSPG PLV
Sbjct: 34 LWTFKHLISNSCSPGDPLV 52
>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 77 CLVPNSCSPGXPLV 36
C V NSCSPG PLV
Sbjct: 32 CTVSNSCSPGDPLV 45
>SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 77 CLVPNSCSPGXPLV 36
C V NSCSPG PLV
Sbjct: 25 CYVSNSCSPGDPLV 38
>SB_9035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Frame = -3
Query: 89 WLDCCL-----VPNSCSPGXPLV 36
W CCL + NSCSPG PLV
Sbjct: 25 WAACCLAYFGFLSNSCSPGDPLV 47
>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
Length = 220
Score = 28.3 bits (60), Expect = 7.9
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 37 TSGSPGLQEFGTRQ-QSSQSQPHL---PAVHPADQRTRLWQPSPSPSVLSYPNSTISYTS 204
TSGSPGLQEF R+ + ++S H P A + L +PS + + T+
Sbjct: 14 TSGSPGLQEFDMRKCKGAESCTHYHGKPRSSSASVQAPLLGATPSVEPTAQSRVVETTTA 73
Query: 205 LILLDV-SEAT 234
L D+ +EAT
Sbjct: 74 LFTNDMTTEAT 84
>SB_8047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 38 LVXPPGCRNSARGNNLAKANLTCPRCTLPTNERGS 142
LV PPGCRNS A N+ RC+ + G+
Sbjct: 15 LVDPPGCRNSIEVIRDAAGNVVELRCSYDPDTLGN 49
>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 46 SPGLQEFGTRQQSSQSQPHLP----AVHPADQRTRLWQPSPSPSV 168
SPG + SSQS PH P ++ P T L P PSP+V
Sbjct: 1064 SPGGRFRSFSTASSQSSPHTPSSKSSLSPGSPGTFLNSPHPSPTV 1108
>SB_47580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 83 DCCLVPNSCSPGXPLV 36
DC NSCSPG PLV
Sbjct: 2 DCASSSNSCSPGDPLV 17
>SB_44775| Best HMM Match : DUF143 (HMM E-Value=7.3e-20)
Length = 342
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 91 SQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE 246
SQPH +R +W+PS S LS+ N T++ ++E T +E
Sbjct: 16 SQPHGATCTCTQRRGSIWRPSLSQQPLSFSNHYTDSTTIHDTRLTEGTQKSE 67
>SB_30632| Best HMM Match : Acyltransferase (HMM E-Value=0.0097)
Length = 263
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 95 WLWLDCC-LVPNSCSPGXPLV 36
+++L CC + NSCSPG PLV
Sbjct: 6 YIFLFCCGELSNSCSPGDPLV 26
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 38 LVXPPGCRNSARGNNLAKANLT 103
LV PPGCRNS G ++ LT
Sbjct: 102 LVDPPGCRNSITGGPVSMEPLT 123
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 16 PRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHP-ADQRTRLWQPSPSPSVLSYPNSTI 192
P W P + +PG +EFGT + + P + P +R P PSP + S P I
Sbjct: 875 PMWAPSSLNPTPGGEEFGTSGWLA-TVPQMQQGGPIITSLSRETSPCPSPPLPSEPVDYI 933
Query: 193 SYTSLILLDVSEA 231
+ S+ + + +A
Sbjct: 934 ADGSVAVKEGLQA 946
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,688,049
Number of Sequences: 59808
Number of extensions: 498293
Number of successful extensions: 4164
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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