Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0578
         (817 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    33   0.62 
X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like p...    31   2.5  
AY121674-1|AAM52001.1|  611|Drosophila melanogaster RE22741p pro...    29   5.8  
AF296285-1|AAL33883.1|  611|Drosophila melanogaster SPZ3 protein.      29   5.8  
AE014134-1358|AAF52574.2|  611|Drosophila melanogaster CG7104-PA...    29   5.8  

>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 90    KPTSPARGAPCRPTNEALATFPFPFCSLLPKF 185
             +P +P + +PC P +E   +   P CS LP+F
Sbjct: 14001 RPQNPCQPSPCGPNSECRVSGDSPSCSCLPEF 14032


>X85998-1|CAA59990.1|  110|Drosophila melanogaster elastin like
          protein protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 38 LVXPPGCRNSARGNNLAKAN 97
          LV PPGCRNSAR    A  N
Sbjct: 12 LVDPPGCRNSARDRQRANLN 31


>AY121674-1|AAM52001.1|  611|Drosophila melanogaster RE22741p
           protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 40  SGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSP 162
           SGS  +  FG+RQQ  Q QP  P   P  Q+    QP P+P
Sbjct: 201 SGSFSITSFGSRQQ--QQQPPQPQQPPPSQQQ---QPPPAP 236


>AF296285-1|AAL33883.1|  611|Drosophila melanogaster SPZ3 protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 40  SGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSP 162
           SGS  +  FG+RQQ  Q QP  P   P  Q+    QP P+P
Sbjct: 201 SGSFSITSFGSRQQ--QQQPPQPQQPPPSQQQ---QPPPAP 236


>AE014134-1358|AAF52574.2|  611|Drosophila melanogaster CG7104-PA
           protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 40  SGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSP 162
           SGS  +  FG+RQQ  Q QP  P   P  Q+    QP P+P
Sbjct: 201 SGSFSITSFGSRQQ--QQQPPQPQQPPPSQQQ---QPPPAP 236


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,219,078
Number of Sequences: 53049
Number of extensions: 766106
Number of successful extensions: 1894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)