Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0578
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81484-3|CAB03971.1| 346|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical pr... 31 1.3
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.0
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 29 5.3
AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical ... 28 7.0
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 9.2
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 9.2
>Z81484-3|CAB03971.1| 346|Caenorhabditis elegans Hypothetical
protein C47A10.6 protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +2
Query: 464 C*FMVRGSMLH*YDSNLEFYKCSG-----PIYILVCFPLKCYFSPSVRVV*RCFLEL 619
C ++ S+ H YD + Y CS P+++++ L F + R+V RC L L
Sbjct: 157 CSLILMASVFHEYDFDAPHYYCSSISVKFPLWVIIPEVLIIVFQIAARIVNRCLLAL 213
>U80448-7|AAB37820.1| 260|Caenorhabditis elegans Hypothetical
protein F59A3.7 protein.
Length = 260
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +3
Query: 453 FIGAVNSWSEAVCSISTIQTLNFTNVLVLSTFWYVFH*SAIFHLQYVLCKDVSSNLQM*P 632
F+G+V ++ + + +I + +L+ +FWYV + I H + K V ++ P
Sbjct: 114 FVGSVETFHSIITILHSIFQFFISIILIRMSFWYVIVLTHICHFELQKSKVVDTSSVYLP 173
Query: 633 NLMTRTKP 656
+ KP
Sbjct: 174 TYLPSYKP 181
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 13 SPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
SP + P S SP G S P P+ P PS SP+ SY ++
Sbjct: 1586 SPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Query: 193 SYT 201
SY+
Sbjct: 1646 SYS 1648
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 13 SPRWRPLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 192
SP + P S SP G S P P+ P PS SP+ SY ++
Sbjct: 1593 SPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
Query: 193 SYT 201
SY+
Sbjct: 1653 SYS 1655
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 97 PHLPAVH---PADQRTRLWQPSPSPSVLSYP 180
P+ A+H P +Q LW P PSP VL YP
Sbjct: 714 PYYTAIHELFPPEQS--LWVPVPSPVVLPYP 742
>AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical
protein Y48G1BL.1 protein.
Length = 318
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 714 GSRTGILKLFKTALTSATRAVWF----WSLN*ATFVSSRKHLYTTRTEGEK*HFSGK 556
GSR K F LTS T W W++ S+RK +TRT G H S +
Sbjct: 19 GSRRRSRKTFTAKLTSPTFRRWSSTEKWTVASREIGSARKRFCSTRTPGAAIHSSNR 75
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 121 ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 291
A Q + Q P P+ + YP N+T S SL + D+ A + + GP+L R
Sbjct: 30 AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 121 ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 291
A Q + Q P P+ + YP N+T S SL + D+ A + + GP+L R
Sbjct: 30 AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 28 PLXTSGSPGLQEFGTRQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 180
P G P RQQ Q QP + A QR L+ P P P + YP
Sbjct: 190 PSYQQGYPQQFPAPQRQQQYQPQPQTTNYNQAPQRP-LYIPPPPPKLQVYP 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,867
Number of Sequences: 27780
Number of extensions: 384754
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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